ENSG00000056586


Homo sapiens

Features
Gene ID: ENSG00000056586
  
Biological name :RC3H2
  
Synonyms : Q9HBD1 / RC3H2 / ring finger and CCCH-type domains 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: q33.2
Gene start: 122844556
Gene end: 122905341
  
Corresponding Affymetrix probe sets: 220201_at (Human Genome U133 Plus 2.0 Array)   220202_s_at (Human Genome U133 Plus 2.0 Array)   225813_at (Human Genome U133 Plus 2.0 Array)   230133_at (Human Genome U133 Plus 2.0 Array)   230134_s_at (Human Genome U133 Plus 2.0 Array)   231716_at (Human Genome U133 Plus 2.0 Array)   238421_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000398081
Ensembl peptide - ENSP00000474709
Ensembl peptide - ENSP00000474148
Ensembl peptide - ENSP00000411767
Ensembl peptide - ENSP00000335150
Ensembl peptide - ENSP00000349783
Ensembl peptide - ENSP00000362774
Ensembl peptide - ENSP00000381663
NCBI entrez gene - 54542     See in Manteia.
OMIM - 615231
RefSeq - NM_001354478
RefSeq - NM_001354486
RefSeq - NM_018835
RefSeq - NM_001100588
RefSeq Peptide - NP_001094058
RefSeq Peptide - NP_001341415
RefSeq Peptide - NP_061323
RefSeq Peptide - NP_001341407
swissprot - Q9HBD1
swissprot - A0A024R899
swissprot - H0Y5D9
swissprot - Q4VXB2
swissprot - A6NHN2
Ensembl - ENSG00000056586
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rc3h2ENSDARG00000063050Danio rerio
 RC3H2ENSGALG00000001253Gallus gallus
 Rc3h2ENSMUSG00000075376Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RC3H1 / Q5TC82 / ring finger and CCCH-type domains 1ENSG0000013587048


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR032670  Roquin-2
 IPR036855  Zinc finger, CCCH-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IMP
 biological_processGO:0001782 B cell homeostasis IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0009791 post-embryonic development IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010608 posttranscriptional regulation of gene expression IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0042098 T cell proliferation IEA
 biological_processGO:0043029 T cell homeostasis IEA
 biological_processGO:0048286 lung alveolus development IEA
 biological_processGO:0048535 lymph node development IEA
 biological_processGO:0048536 spleen development IEA
 biological_processGO:0060173 limb development IEA
 biological_processGO:0061470 T follicular helper cell differentiation IEA
 biological_processGO:1901224 positive regulation of NIK/NF-kappaB signaling IEA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IDA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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