ENSDARG00000062900


Danio rerio

Features
Gene ID: ENSDARG00000062900
  
Biological name :si:ch211-81a5.1
  
Synonyms : si:ch211-81a5.1
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RNF115 / Q9D0C1 / Q9Y4L5 / ring finger protein 115 / RNF115
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 9004256
Gene end: 9017910
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000085876
Ensembl peptide - ENSDARP00000149409
NCBI entrez gene - 563879     See in Manteia.
swissprot - F1QQA9
ZFIN ID - ZDB-GENE-060503-608
Ensembl - ENSDARG00000062900
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9Y4L5ENSG00000265491Homo sapiens
 Q9D0C1ENSMUSG00000028098Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf115 / ring finger protein 115 / Q9D0C1* / Q9Y4L5* / E3 ubiquitin-protein ligase RNF115 *ENSDARG0000006245056
rnf126 / ring finger protein 126 / Q9BV68*ENSDARG0000010407639
rnf181 / Q7ZW78 / ring finger protein 181 / Q9CY62* / Q9P0P0* / Mus musculus ring finger protein 181 (Rnf181), transcript variant 11, mRNA.*ENSDARG0000002395816
pja2 / praja ring finger ubiquitin ligase 2 / PJA1* / Q8NG27* / O43164* / O55176* / Q80U04* / E3 ubiquitin-protein ligase Praja-2 * / E3 ubiquitin-protein ligase Praja-1 * / praja ring fing...ENSDARG0000010029615


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IBA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr