ENSDARG00000023958


Danio rerio

Features
Gene ID: ENSDARG00000023958
  
Biological name :rnf181
  
Synonyms : Q7ZW78 / ring finger protein 181 / rnf181
  
Possible biological names infered from orthology : Mus musculus ring finger protein 181 (Rnf181), transcript variant 11, mRNA. / Q9CY62 / Q9P0P0
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 26756021
Gene end: 26765188
  
Corresponding Affymetrix probe sets: Dr.14819.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000038991
Ensembl peptide - ENSDARP00000120112
Ensembl peptide - ENSDARP00000123250
Ensembl peptide - ENSDARP00000146932
swissprot - Q7ZW78
ZFIN ID - ZDB-GENE-040426-1024
Ensembl - ENSDARG00000023958
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9P0P0ENSG00000168894Homo sapiens
 Q9CY62ENSMUSG00000055850Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-81a5.1 / Q9Y4L5* / Q9D0C1* / RNF115* / ring finger protein 115* / E3 ubiquitin-protein ligase RNF115 *ENSDARG0000006290031
rnf126 / ring finger protein 126 / Q9BV68*ENSDARG0000010407630
rnf115 / ring finger protein 115 / Q9D0C1* / Q9Y4L5* / E3 ubiquitin-protein ligase RNF115 *ENSDARG0000006245030
pja2 / praja ring finger ubiquitin ligase 2 / PJA1* / Q8NG27* / O43164* / O55176* / Q80U04* / E3 ubiquitin-protein ligase Praja-2 * / E3 ubiquitin-protein ligase Praja-1 * / praja ring fing...ENSDARG0000010029622


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IBA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
E3 ubiquitin ligases ubiquitinate target proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000038576 ube2d1b / ubiquitin-conjugating enzyme E2D 1b / UBE2D1* / P51668* / P61080* / ubiquitin conjugating enzyme E2 D1*  / reaction / complex
 ENSDARG00000008748 ube2na / ubiquitin-conjugating enzyme E2Na / UBE2N* / P61089* / UBE2NL* / P61088* / ubiquitin conjugating enzyme E2 N* / ubiquitin conjugating enzyme E2 N like (gene/pseudogene)*  / reaction / complex
 ENSDARG00000034670 ube2e2 / ubiquitin-conjugating enzyme E2E 2 / Q91W82* / Q96LR5* / UBE2E1* / P52482* / P51965* / ubiquitin conjugating enzyme E2 E1*  / complex / reaction
 ENSDARG00000116649 rpl15 / ube2e1 / ubiquitin-conjugating enzyme E2E 1 / Q96LR5* / P51965* / UBE2E2* / ubiquitin conjugating enzyme E2 E2*  / complex / reaction
 ENSDARG00000043484 ube2d2 / ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) / P62838* / P62837* / Ube2d2a* / ubiquitin conjugating enzyme E2 D2* / ubiquitin-conjugating enzyme E2D 2A*  / reaction / complex
 ENSDARG00000045877 ube2nb / ubiquitin-conjugating enzyme E2Nb / UBE2N* / P61089* / UBE2NL* / P61088* / ubiquitin conjugating enzyme E2 N* / ubiquitin conjugating enzyme E2 N like (gene/pseudogene)*  / complex / reaction
 ENSDARG00000077130 bcl10 / B cell CLL/lymphoma 10 / O95999* / Q9Z0H7* / B-cell lymphoma/leukemia 10 *  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr