ENSDARG00000063466


Danio rerio

Features
Gene ID: ENSDARG00000063466
  
Biological name :isy1
  
Synonyms : isy1 / ISY1 splicing factor homolog
  
Possible biological names infered from orthology : ISY1-RAB43 / ISY1-RAB43 readthrough / Pre-mRNA-splicing factor ISY1 homolog / Q69ZQ2 / Q9ULR0
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 474433
Gene end: 486532
  
Corresponding Affymetrix probe sets: Dr.9018.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000087580
NCBI entrez gene - 570205     See in Manteia.
RefSeq - NM_001083563
RefSeq Peptide - NP_001077032
swissprot - A4FUN5
ZFIN ID - ZDB-GENE-030131-5864
Ensembl - ENSDARG00000063466
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000005012Gallus gallus
 ISY1ENSG00000240682Homo sapiens
 ISY1-RAB43ENSG00000261796Homo sapiens
 Isy1ENSMUSG00000030056Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009360  Pre-mRNA-splicing factor Isy1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000350 generation of catalytic spliceosome for second transesterification step IBA
 biological_processGO:0000389 mRNA 3"-splice site recognition IBA
 cellular_componentGO:0000974 Prp19 complex IBA
 cellular_componentGO:0071012 catalytic step 1 spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:0071014 post-mRNA release spliceosomal complex IBA
 cellular_componentGO:0071020 post-spliceosomal complex IBA
 molecular_functionGO:0000384 first spliceosomal transesterification activity IBA


Pathways (from Reactome)
Pathway description
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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