ENSMUSG00000030056


Mus musculus

Features
Gene ID: ENSMUSG00000030056
  
Biological name :Isy1
  
Synonyms : Isy1 / Pre-mRNA-splicing factor ISY1 homolog / Q69ZQ2
  
Possible biological names infered from orthology : ISY1-RAB43 / ISY1-RAB43 readthrough / ISY1 splicing factor homolog / Q9ULR0
  
Species: Mus musculus
  
Chr. number: 6
Strand: -1
Band: D1
Gene start: 87814269
Gene end: 87838798
  
Corresponding Affymetrix probe sets: 10546066 (MoGene1.0st)   1419357_at (Mouse Genome 430 2.0 Array)   1458256_at (Mouse Genome 430 2.0 Array)   1459728_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000086923
Ensembl peptide - ENSMUSP00000145001
Ensembl peptide - ENSMUSP00000144956
Ensembl peptide - ENSMUSP00000144710
NCBI entrez gene - 57905     See in Manteia.
MGI - MGI:1923310
RefSeq - NM_133934
RefSeq Peptide - NP_598695
swissprot - A0A0N4SV52
swissprot - A0A0N4SUJ7
swissprot - A0A0N4SV90
swissprot - Q69ZQ2
Ensembl - ENSMUSG00000030056
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 isy1ENSDARG00000063466Danio rerio
 ENSGALG00000005012Gallus gallus
 ISY1ENSG00000240682Homo sapiens
 ISY1-RAB43ENSG00000261796Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009360  Pre-mRNA-splicing factor Isy1
 IPR037200  Pre-mRNA-splicing factor Isy1 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000350 generation of catalytic spliceosome for second transesterification step IEA
 biological_processGO:0000389 mRNA 3"-splice site recognition IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0000974 Prp19 complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0071012 catalytic step 1 spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:0071014 post-mRNA release spliceosomal complex IBA
 cellular_componentGO:0071020 post-spliceosomal complex IBA
 molecular_functionGO:0000384 first spliceosomal transesterification activity IBA


Pathways (from Reactome)
Pathway description
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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