ENSDARG00000063626


Danio rerio

Features
Gene ID: ENSDARG00000063626
  
Biological name :ddx21
  
Synonyms : ddx21 / DEAD (Asp-Glu-Ala-Asp) box helicase 21
  
Possible biological names infered from orthology : DExD-box helicase 21 / Nucleolar RNA helicase 2 / Q9JIK5 / Q9NR30
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 319575
Gene end: 330004
  
Corresponding Affymetrix probe sets: Dr.25607.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000087581
Ensembl peptide - ENSDARP00000124106
NCBI entrez gene - 799650     See in Manteia.
RefSeq - NM_001127335
RefSeq Peptide - NP_001120807
swissprot - F8W540
swissprot - B1H1J4
ZFIN ID - ZDB-GENE-031113-10
Ensembl - ENSDARG00000063626
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX21ENSGALG00000004144Gallus gallus
 DDX21ENSG00000165732Homo sapiens
 Ddx21ENSMUSG00000020075Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR012562  GUCT
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr