ENSGALG00000004144


Gallus gallus

Features
Gene ID: ENSGALG00000004144
  
Biological name :DDX21
  
Synonyms : DDX21 / DExD-box helicase 21
  
Possible biological names infered from orthology : Nucleolar RNA helicase 2 / Q9JIK5 / Q9NR30
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 10782146
Gene end: 10795181
  
Corresponding Affymetrix probe sets: Gga.16459.1.S1_s_at (Chicken Array)   Gga.5656.1.S1_a_at (Chicken Array)   GgaAffx.21290.1.S1_at (Chicken Array)   GgaAffx.21290.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000006581
NCBI entrez gene - 768898     See in Manteia.
RefSeq - XM_001232051
swissprot - E1BW15
Ensembl - ENSGALG00000004144
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx21ENSDARG00000063626Danio rerio
 DDX21ENSG00000165732Homo sapiens
 Ddx21ENSMUSG00000020075Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR012562  GUCT
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0009615 response to virus IEA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 biological_processGO:0043330 response to exogenous dsRNA IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003725 double-stranded RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0019843 rRNA binding IEA
 molecular_functionGO:0030515 snoRNA binding IEA
 molecular_functionGO:0035198 miRNA binding IEA
 molecular_functionGO:0097322 7SK snRNA binding IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr