ENSDARG00000067670


Danio rerio

Features
Gene ID: ENSDARG00000067670
  
Biological name :pomt1
  
Synonyms : F1QF89 / pomt1 / protein-O-mannosyltransferase 1
  
Possible biological names infered from orthology : Protein O-mannosyl-transferase 1 / Q8R2R1 / Q9Y6A1
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 51111343
Gene end: 51128031
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000086435
Ensembl peptide - ENSDARP00000155683
NCBI entrez gene - 569769     See in Manteia.
RefSeq - NM_001048067
RefSeq Peptide - NP_001041532
swissprot - F1QF89
ZFIN ID - ZDB-GENE-060929-966
Ensembl - ENSDARG00000067670
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POMT1ENSGALG00000003757Gallus gallus
 POMT1ENSG00000130714Homo sapiens
 Pomt1ENSMUSG00000039254Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pomt2 / F1Q8R9 / protein-O-mannosyltransferase 2 / Q9UKY4* / Q8BGQ4* / Protein O-mannosyl-transferase 2 *ENSDARG0000005502730


Protein motifs (from Interpro)
Interpro ID Name
 IPR003342  Glycosyl transferase family 39/83
 IPR016093  MIR motif
 IPR027005  Glycosyltransferase 39-like
 IPR032421  Protein O-mannosyl-transferase, C-terminal four TM domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006486 protein glycosylation IEA
 biological_processGO:0006493 protein O-linked glycosylation IEA
 biological_processGO:0035269 protein O-linked mannosylation IGI
 biological_processGO:0071712 ER-associated misfolded protein catabolic process IBA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000030 mannosyltransferase activity IEA
 molecular_functionGO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity IGI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA


Pathways (from Reactome)
Pathway description
O-linked glycosylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001117 post-vent region post-vent region increased curvature , abnormal
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 ZFA:0001462 somite border somite border curvature , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000055027 pomt2 / F1Q8R9 / protein-O-mannosyltransferase 2 / Q9UKY4* / Q8BGQ4* / Protein O-mannosyl-transferase 2 *  / complex
 ENSDARG00000016153 dag1 / dystroglycan 1 / Q14118* / Q62165* / Dystroglycan Alpha-dystroglycan Beta-dystroglycan*  / reaction






 

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