ENSDARG00000067673


Danio rerio

Features
Gene ID: ENSDARG00000067673
  
Biological name :snapc4
  
Synonyms : small nuclear RNA activating complex, polypeptide 4 / snapc4
  
Possible biological names infered from orthology : Q5SXM2 / Q8BP86 / snRNA-activating protein complex subunit 4
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 51164440
Gene end: 51198521
  
Corresponding Affymetrix probe sets: Dr.25675.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000124062
Ensembl peptide - ENSDARP00000132199
Ensembl peptide - ENSDARP00000088244
Ensembl peptide - ENSDARP00000121534
NCBI entrez gene - 561241     See in Manteia.
swissprot - A0A0R4IFN5
swissprot - F1QVS5
swissprot - F1R7G5
swissprot - F8W3R2
ZFIN ID - ZDB-GENE-030131-5794
Ensembl - ENSDARG00000067673
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNAPC4ENSGALG00000044726Gallus gallus
 Q5SXM2ENSG00000165684Homo sapiens
 Q8BP86ENSMUSG00000036281Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
mybl1 / v-myb avian myeloblastosis viral oncogene homolog-like 1 / P10243* / MYB proto-oncogene like 1*ENSDARG000000309998
mybl2b / v-myb avian myeloblastosis viral oncogene homolog-like 2b / MYBL2* / P10244* / P48972* / Myb-related protein B * / MYB proto-oncogene like 2*ENSDARG000000322647
myb / v-myb avian myeloblastosis viral oncogene homolog / P06876* / P10242* / Transcriptional activator Myb * / MYB proto-oncogene, transcription factor*ENSDARG000000536666
mybl2a / v-myb avian myeloblastosis viral oncogene homolog-like 2aENSDARG000000952416


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR017877  Myb-like domain
 IPR017930  Myb domain
 IPR031282  snRNA-activating protein complex subunit 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0008283 cell proliferation IMP
 biological_processGO:0009301 snRNA transcription IEA
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0031016 pancreas development IMP
 biological_processGO:0035622 intrahepatic bile duct development IMP
 biological_processGO:0090307 mitotic spindle assembly IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0019185 snRNA-activating protein complex IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0001135 transcription factor activity, RNA polymerase II transcription factor recruiting IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000036 liver and biliary system liver and biliary system decreased functionality , abnormal
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 ZFA:0000095 pharyngeal arch 3-7 skeleton pharyngeal arch 3-7 skeleton absent , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000123 liver liver decreased size , abnormal
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 ZFA:0000140 pancreas pancreas decreased size , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
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 ZFA:0001216 splanchnocranium splanchnocranium morphology , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton malformed , abnormal
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 ZFA:0001249 exocrine pancreas exocrine pancreas degenerate , abnormal
exocrine pancreas decreased thickness , abnormal
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 ZFA:0005169 intrahepatic bile duct intrahepatic bile duct degenerate , abnormal
intrahepatic bile duct epithelial cell decreased amount , abnormal
intrahepatic bile duct unbranched , abnormal
intrahepatic bile duct apoptotic , abnormal
intrahepatic bile duct hypoplastic , abnormal
intrahepatic bile duct absent , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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