ENSG00000165684


Homo sapiens

Features
Gene ID: ENSG00000165684
  
Biological name :SNAPC4
  
Synonyms : Q5SXM2 / small nuclear RNA activating complex polypeptide 4 / SNAPC4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: q34.3
Gene start: 136375577
Gene end: 136400168
  
Corresponding Affymetrix probe sets: 205658_s_at (Human Genome U133 Plus 2.0 Array)   215926_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000298532
Ensembl peptide - ENSP00000490037
NCBI entrez gene - 6621     See in Manteia.
OMIM - 602777
RefSeq - XM_017015058
RefSeq - NM_003086
RefSeq - XM_005266096
RefSeq - XM_006717241
RefSeq - XM_006717242
RefSeq Peptide - NP_003077
swissprot - A0A1B0GUB4
swissprot - A0A024R8F4
swissprot - Q5SXM2
Ensembl - ENSG00000165684
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snapc4ENSDARG00000067673Danio rerio
 SNAPC4ENSGALG00000044726Gallus gallus
 Q8BP86ENSMUSG00000036281Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MYB / P10242 / MYB proto-oncogene, transcription factorENSG0000011851310
MYBL1 / P10243 / MYB proto-oncogene like 1ENSG000001856979
MYBL2 / P10244 / MYB proto-oncogene like 2ENSG000001010579


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR017877  Myb-like domain
 IPR017930  Myb domain
 IPR031282  snRNA-activating protein complex subunit 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0006383 transcription by RNA polymerase III TAS
 biological_processGO:0009301 snRNA transcription IEA
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0042795 snRNA transcription by RNA polymerase II TAS
 biological_processGO:0042796 snRNA transcription by RNA polymerase III IDA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0019185 snRNA-activating protein complex IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0001135 transcription factor activity, RNA polymerase II transcription factor recruiting IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0043565 sequence-specific DNA binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
RNA Polymerase III Abortive And Retractive Initiation
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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