ENSMUSG00000036281


Mus musculus

Features
Gene ID: ENSMUSG00000036281
  
Biological name :Snapc4
  
Synonyms : Q8BP86 / Snapc4 / snRNA-activating protein complex subunit 4
  
Possible biological names infered from orthology : Q5SXM2 / small nuclear RNA activating complex polypeptide 4
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: A3
Gene start: 26362765
Gene end: 26380653
  
Corresponding Affymetrix probe sets: 10480971 (MoGene1.0st)   1441795_at (Mouse Genome 430 2.0 Array)   1455552_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000041767
Ensembl peptide - ENSMUSP00000109750
Ensembl peptide - ENSMUSP00000122456
NCBI entrez gene - 227644     See in Manteia.
MGI - MGI:2443935
RefSeq - XM_017317221
RefSeq - XM_011239067
RefSeq - XM_011239068
RefSeq - XM_011239069
RefSeq - XM_011239070
RefSeq - XM_011239071
RefSeq - NM_001290419
RefSeq - NM_172339
RefSeq - XM_006497903
RefSeq - XM_011239064
RefSeq - XM_011239065
RefSeq - XM_011239066
RefSeq Peptide - NP_001277348
RefSeq Peptide - NP_758842
swissprot - F7D5X7
swissprot - Q8BP86
swissprot - A2AIV6
Ensembl - ENSMUSG00000036281
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snapc4ENSDARG00000067673Danio rerio
 SNAPC4ENSGALG00000044726Gallus gallus
 Q5SXM2ENSG00000165684Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Myb / P06876 / Transcriptional activator Myb / P10242* / MYB proto-oncogene, transcription factor*ENSMUSG0000001998210
Mybl1 / MYB proto-oncogene like 1 / P10243*ENSMUSG000000259129
Mybl2 / P48972 / Myb-related protein B / P10244* / MYB proto-oncogene like 2*ENSMUSG000000178619


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR017877  Myb-like domain
 IPR017930  Myb domain
 IPR031282  snRNA-activating protein complex subunit 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0009301 snRNA transcription IEA
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0042795 snRNA transcription by RNA polymerase II IEA
 biological_processGO:0042796 snRNA transcription by RNA polymerase III IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0019185 snRNA-activating protein complex ISO
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0001135 transcription factor activity, RNA polymerase II transcription factor recruiting IBA
 molecular_functionGO:0003677 DNA binding ISO
 molecular_functionGO:0043565 sequence-specific DNA binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0005296 abnormal humerus morphology "malformation of the bone of the forelimb that articulates with the scapula above and the radius and ulna below" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Smstm1a(EUCOMM)Wtsi/Y
Genetic Background: B6JTyr;B6N-Smstm1a(EUCOMM)Wtsi/Wtsi

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
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