ENSDARG00000069302


Danio rerio

Features
Gene ID: ENSDARG00000069302
  
Biological name :snx9b
  
Synonyms : snx9b / sorting nexin 9b
  
Possible biological names infered from orthology : Q91VH2 / Q9Y5X1 / SNX9 / sorting nexin 9
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 43016437
Gene end: 43079481
  
Corresponding Affymetrix probe sets: Dr.8990.1.A1_at (Zebrafish Array)   NM_001030124_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000060937
Ensembl peptide - ENSDARP00000060981
NCBI entrez gene - 558917     See in Manteia.
RefSeq - NM_001030124
RefSeq Peptide - NP_001025295
swissprot - Q5SPP1
swissprot - Q5SPP2
ZFIN ID - ZDB-GENE-031118-50
Ensembl - ENSDARG00000069302
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNX9ENSGALG00000013710Gallus gallus
 SNX9ENSG00000130340Homo sapiens
 Snx9ENSMUSG00000002365Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snx9a / sorting nexin 9a / SNX9* / Q9Y5X1* / Q91VH2* / sorting nexin 9*ENSDARG0000000083765
snx18a / sorting nexin 18a / SNX18* / Q96RF0* / sorting nexin 18*ENSDARG0000006771334
snx18b / sorting nexin 18b / SNX18* / Q96RF0* / sorting nexin 18*ENSDARG0000004424633
snx33 / sorting nexin 33 / Q4VAA7* / Q8WV41*ENSDARG0000001495433


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR001683  Phox homologous domain
 IPR014536  Sorting nexin 9 family
 IPR019497  Sorting nexin protein, WASP-binding domain
 IPR028644  Sorting nexin-9
 IPR035558  SNX9, SH3 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000278 mitotic cell cycle IEA
 biological_processGO:0000281 mitotic cytokinesis IEA
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0015031 protein transport IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IBA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA


Pathways (from Reactome)
Pathway description
Golgi Associated Vesicle Biogenesis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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