ENSDARG00000069775


Danio rerio

Features
Gene ID: ENSDARG00000069775
  
Biological name :fbxo40.1
  
Synonyms : F-box protein 40, tandem duplicate 1 / fbxo40.1
  
Possible biological names infered from orthology : F-box protein 40 / FBXO40 / Mus musculus F-box protein 40 (Fbxo40), transcript variant 1, mRNA. / P62932 / Q9UH90
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 22726759
Gene end: 22730832
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000092573
NCBI entrez gene - 100005140     See in Manteia.
RefSeq - NM_001113657
RefSeq Peptide - NP_001107129
swissprot - F1Q6V8
ZFIN ID - ZDB-GENE-080220-36
Ensembl - ENSDARG00000069775
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FBXO40ENSGALG00000013999Gallus gallus
 FBXO40ENSG00000163833Homo sapiens
 Fbxo40ENSMUSG00000047746Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
fbxo40.2 / F-box protein 40, tandem duplicate 2 / FBXO40* / P62932* / Q9UH90* / F-box protein 40* / Mus musculus F-box protein 40 (Fbxo40), transcript variant 1, mRNA.*ENSDARG0000009111947
fbxo30b / F-box protein 30bENSDARG0000001931132
fbxo30a / F-box protein 30a / Q8TB52* / FBXO30* / Q8BJL1* / F-box protein 30* / F-box only protein 30 *ENSDARG0000005856131


Protein motifs (from Interpro)
Interpro ID Name
 IPR001293  Zinc finger, TRAF-type
 IPR001810  F-box domain
 IPR008974  TRAF-like
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR031890  F-box only protein 30/40


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
Neddylation
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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