ENSDARG00000070006


Danio rerio

Features
Gene ID: ENSDARG00000070006
  
Biological name :rcn1
  
Synonyms : rcn1 / reticulocalbin 1, EF-hand calcium binding domain
  
Possible biological names infered from orthology : AL035078.4 / Q05186 / Q15293 / Reticulocalbin-1
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 15818778
Gene end: 15830251
  
Corresponding Affymetrix probe sets: Dr.26524.1.S1_at (Zebrafish Array)   XM_686046_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000093139
NCBI entrez gene - 562671     See in Manteia.
RefSeq - XM_686046
swissprot - F1R369
ZFIN ID - ZDB-GENE-080225-33
Ensembl - ENSDARG00000070006
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000012121Gallus gallus
 Q15293ENSG00000285283Homo sapiens
 RCN1ENSG00000049449Homo sapiens
 Rcn1ENSMUSG00000005973Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
calua / calumenin a / CALU* / O35887* / O43852* / calumenin*ENSDARG0000004567661
rcn3 / reticulocalbin 3, EF-hand calcium binding domainENSDARG0000003796159
calub / calumenin bENSDARG0000000511558
rcn2 / reticulocalbin 2 / Q14257* / Q8BP92*ENSDARG0000003937830
sdf4 / Q7ZUC2 / stromal cell derived factor 4 / Q61112* / Q9BRK5*ENSDARG0000007068225


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site
 IPR027241  Reticulocalbin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
Post-translational protein phosphorylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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