ENSDARG00000070682


Danio rerio

Features
Gene ID: ENSDARG00000070682
  
Biological name :sdf4
  
Synonyms : Q7ZUC2 / sdf4 / stromal cell derived factor 4
  
Possible biological names infered from orthology : Q61112 / Q9BRK5
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 24693533
Gene end: 24699400
  
Corresponding Affymetrix probe sets: Dr.20092.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000094806
NCBI entrez gene - 406360     See in Manteia.
RefSeq - NM_213087
RefSeq Peptide - NP_998252
swissprot - Q7ZUC2
ZFIN ID - ZDB-GENE-040426-2061
Ensembl - ENSDARG00000070682
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SDF4ENSGALG00000001872Gallus gallus
 SDF4ENSG00000078808Homo sapiens
 Sdf4ENSMUSG00000029076Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rcn2 / reticulocalbin 2 / Q14257* / Q8BP92*ENSDARG0000003937824
rcn3 / reticulocalbin 3, EF-hand calcium binding domainENSDARG0000003796124
calub / calumenin bENSDARG0000000511524
calua / calumenin a / CALU* / O35887* / O43852* / calumenin*ENSDARG0000004567623
rcn1 / reticulocalbin 1, EF-hand calcium binding domain / Q15293* / Q05186* / AL035078.4* / Reticulocalbin-1 *ENSDARG0000007000622


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002040 sprouting angiogenesis IMP
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005796 Golgi lumen IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism degree of pigmentation , abnormal
whole organism anterior-posterior axis curved ventral , abnormal
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 ZFA:0001285 intersegmental vessel intersegmental vessel decreased thickness , abnormal
intersegmental vessel malformed , abnormal
intersegmental vessel angiogenesis process quality , abnormal
Show

 ZFA:0005025 dorsal longitudinal anastomotic vessel dorsal longitudinal anastomotic vessel malformed , abnormal
dorsal longitudinal anastomotic vessel aplastic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr