ENSMUSG00000029076


Mus musculus

Features
Gene ID: ENSMUSG00000029076
  
Biological name :Sdf4
  
Synonyms : Q61112 / Sdf4 / stromal cell derived factor 4
  
Possible biological names infered from orthology : Q9BRK5
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: E2
Gene start: 155992872
Gene end: 156013610
  
Corresponding Affymetrix probe sets: 10511269 (MoGene1.0st)   1426393_a_at (Mouse Genome 430 2.0 Array)   1448367_at (Mouse Genome 430 2.0 Array)   1455584_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000053175
Ensembl peptide - ENSMUSP00000095340
Ensembl peptide - ENSMUSP00000101203
Ensembl peptide - ENSMUSP00000101204
NCBI entrez gene - 20318     See in Manteia.
MGI - MGI:108079
RefSeq - NM_001302468
RefSeq - NM_001302467
RefSeq - NM_001302469
RefSeq - NM_011341
RefSeq Peptide - NP_001289396
RefSeq Peptide - NP_001289397
RefSeq Peptide - NP_001289398
RefSeq Peptide - NP_035471
swissprot - Q61112
Ensembl - ENSMUSG00000029076
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sdf4ENSDARG00000070682Danio rerio
 SDF4ENSGALG00000001872Gallus gallus
 SDF4ENSG00000078808Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rcn2 / Q8BP92 / Reticulocalbin-2 / Q14257*ENSMUSG0000003232024
Calu / O35887 / Calumenin / O43852*ENSMUSG0000002976724
Rcn3 / Q8BH97 / Mus musculus reticulocalbin 3, EF-hand calcium binding domain (Rcn3), transcript variant 2, mRNA. / Q96D15* / reticulocalbin 3*ENSMUSG0000001953924
Rcn1 / Q05186 / Reticulocalbin-1 / Q15293* / AL035078.4*ENSMUSG0000000597323


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009650 UV protection ISS
 biological_processGO:0021549 cerebellum development ISS
 biological_processGO:0045444 fat cell differentiation IEP
 biological_processGO:0045471 response to ethanol ISS
 cellular_componentGO:0005770 late endosome ISS
 cellular_componentGO:0005794 Golgi apparatus ISO
 cellular_componentGO:0005796 Golgi lumen IDA
 molecular_functionGO:0005509 calcium ion binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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