ENSG00000078808


Homo sapiens

Features
Gene ID: ENSG00000078808
  
Biological name :SDF4
  
Synonyms : Q9BRK5 / SDF4 / stromal cell derived factor 4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p36.33
Gene start: 1216908
Gene end: 1232031
  
Corresponding Affymetrix probe sets: 217855_x_at (Human Genome U133 Plus 2.0 Array)   221972_s_at (Human Genome U133 Plus 2.0 Array)   224472_x_at (Human Genome U133 Plus 2.0 Array)   232032_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000263741
Ensembl peptide - ENSP00000435962
Ensembl peptide - ENSP00000384207
Ensembl peptide - ENSP00000353094
NCBI entrez gene - 51150     See in Manteia.
OMIM - 614282
RefSeq - NM_016176
RefSeq - NM_016547
RefSeq Peptide - NP_057260
RefSeq Peptide - NP_057631
swissprot - Q9BRK5
swissprot - A0A024R084
swissprot - G3V1E2
swissprot - H0Y3T6
swissprot - A0A024R0A9
Ensembl - ENSG00000078808
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sdf4ENSDARG00000070682Danio rerio
 SDF4ENSGALG00000001872Gallus gallus
 Sdf4ENSMUSG00000029076Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RCN1 / Q15293 / reticulocalbin 1ENSG0000004944924
RCN2 / Q14257 / reticulocalbin 2ENSG0000011790623
CALU / O43852 / calumeninENSG0000012859523
RCN3 / Q96D15 / reticulocalbin 3ENSG0000014255223
Q15293 / AL035078.4 / Reticulocalbin-1 ENSG0000028528319


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006887 exocytosis IEA
 biological_processGO:0009650 UV protection ISS
 biological_processGO:0017156 calcium ion regulated exocytosis ISS
 biological_processGO:0021549 cerebellum development ISS
 biological_processGO:0045444 fat cell differentiation ISS
 biological_processGO:0045471 response to ethanol ISS
 biological_processGO:0070625 zymogen granule exocytosis ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005770 late endosome ISS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005796 Golgi lumen ISS
 cellular_componentGO:0005886 plasma membrane ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0032059 bleb IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0042802 identical protein binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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