ENSGALG00000001872


Gallus gallus

Features
Gene ID: ENSGALG00000001872
  
Biological name :SDF4
  
Synonyms : 45 kDa calcium-binding protein / Q5ZKE5 / SDF4
  
Possible biological names infered from orthology : Q61112 / Q9BRK5 / stromal cell derived factor 4
  
Species: Gallus gallus
  
Chr. number: 21
Strand: 1
Band:
Gene start: 2526773
Gene end: 2539565
  
Corresponding Affymetrix probe sets: GgaAffx.1230.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000002903
NCBI entrez gene - 419423     See in Manteia.
RefSeq - NM_001006302
RefSeq Peptide - NP_001006302
swissprot - Q5ZKE5
Ensembl - ENSGALG00000001872
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sdf4ENSDARG00000070682Danio rerio
 SDF4ENSG00000078808Homo sapiens
 Sdf4ENSMUSG00000029076Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RCN2 / reticulocalbin-2 isoform 1 precursor / Q14257* / Q8BP92* / reticulocalbin 2*ENSGALG0000003928424
RCN1* / Q05186* / Q15293* / AL035078.4* / Reticulocalbin-1 *ENSGALG0000001212122


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045444 fat cell differentiation IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005796 Golgi lumen IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr