ENSDARG00000070470


Danio rerio

Features
Gene ID: ENSDARG00000070470
  
Biological name :sh3rf1
  
Synonyms : SH3 domain containing ring finger 1 / sh3rf1
  
Possible biological names infered from orthology : Q7Z6J0
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 23742574
Gene end: 23836967
  
Corresponding Affymetrix probe sets: Dr.11976.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000050558
NCBI entrez gene - 556523     See in Manteia.
RefSeq - NM_001045487
RefSeq Peptide - NP_001038952
swissprot - B3DIT8
ZFIN ID - ZDB-GENE-030131-6288
Ensembl - ENSDARG00000070470
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SH3RF1ENSGALG00000009692Gallus gallus
 Q7Z6J0ENSG00000154447Homo sapiens
 Sh3rf1ENSMUSG00000031642Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SH3RF3 / si:ch211-124n19.2 / Q8TEJ3* / SH3 domain containing ring finger 3*ENSDARG0000010233429
sh3rf2 / SH3 domain containing ring finger 2 / Q8BZT2* / Q8TEC5* / Putative E3 ubiquitin-protein ligase SH3RF2 *ENSDARG0000010117823
sorbs2b / sorbin and SH3 domain containing 2b / O94875* / Q3UTJ2* / SORBS2* / sorbin and SH3 domain containing 2*ENSDARG0000006160314
sorbs2a / sorbin and SH3 domain containing 2a / O94875* / Q3UTJ2* / SORBS2* / sorbin and SH3 domain containing 2*ENSDARG0000000304612
sorbs3 / sorbin and SH3 domain containing 3 / O60504* / Q9R1Z8*ENSDARG0000003747611
sorbs1 / sorbin and SH3 domain containing 1 / Q9BX66*ENSDARG0000010343511
sh3d19 / SH3 domain containing 19 / Q5HYK7* / Q91X43* / SH3 domain-containing protein 19 *ENSDARG000000882029


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR018957  Zinc finger, C3HC4 RING-type
 IPR028502  E3 ubiquitin-protein ligase SH3RF1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0046328 regulation of JNK cascade IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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