ENSDARG00000070507


Danio rerio

Features
Gene ID: ENSDARG00000070507
  
Biological name :trpc4a
  
Synonyms : transient receptor potential cation channel, subfamily C, member 4a / trpc4a
  
Possible biological names infered from orthology : Q9QUQ5 / Q9UBN4 / transient receptor potential cation channel subfamily C member 4 / TRPC4
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 25829262
Gene end: 25860102
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000153505
Ensembl peptide - ENSDARP00000075235
NCBI entrez gene - 102725537     See in Manteia.
RefSeq - NM_001289882
RefSeq - XM_021479099
RefSeq - XM_678557
RefSeq Peptide - NP_001276811
swissprot - E7FGL3
ZFIN ID - ZDB-GENE-131217-1
Ensembl - ENSDARG00000070507
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRPC4ENSGALG00000017044Gallus gallus
 TRPC4ENSG00000133107Homo sapiens
 Trpc4ENSMUSG00000027748Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trpc4b / transient receptor potential cation channel, subfamily C, member 4b / TRPC4* / Q9QUQ5* / Q9UBN4* / transient receptor potential cation channel subfamily C member 4*ENSDARG0000010201774
trpc5b / transient receptor potential cation channel, subfamily C, member 5b / TRPC5* / Q9QX29* / Q9UL62* / transient receptor potential cation channel subfamily C member 5*ENSDARG0000006083759
trpc5a / transient receptor potential cation channel, subfamily C, member 5a / TRPC5* / Q9QX29* / Q9UL62* / transient receptor potential cation channel subfamily C member 5*ENSDARG0000007050446
trpc1 / transient receptor potential cation channel, subfamily C, member 1 / P48995*ENSDARG0000006120336
trpc6a / transient receptor potential cation channel, subfamily C, member 6a / TRPC6* / Q61143* / Q9Y210* / transient receptor potential cation channel subfamily C member 6*ENSDARG0000005662533
trpc7a / transient receptor potential cation channel, subfamily C, member 7a / TRPC7* / Q9HCX4* / Q9WVC5* / transient receptor potential cation channel subfamily C member 7*ENSDARG0000002752333
trpc6b / transient receptor potential cation channel, subfamily C, member 6b / TRPC6* / Q61143* / Q9Y210* / transient receptor potential cation channel subfamily C member 6*ENSDARG0000006773032
trpc3 / transient receptor potential cation channel, subfamily C, member 3 / Q13507*ENSDARG0000009829131
trpc2b / transient receptor potential cation channel, subfamily C, member 2b / Trpc2* / Q9R244* / Xntrpc* / Short transient receptor potential channel 2 * / Xndc1-transient receptor potenti...ENSDARG0000000334428
trpc7b / transient receptor potential cation channel, subfamily C, member 7b / TRPC7* / Q9HCX4* / transient receptor potential cation channel subfamily C member 7*ENSDARG0000007946928
trpc2a / transient receptor potential cation channel, subfamily C, member 2a / Trpc2* / Q9R244* / Xntrpc* / Short transient receptor potential channel 2 * / Xndc1-transient receptor potenti...ENSDARG0000003906527


Protein motifs (from Interpro)
Interpro ID Name
 IPR002110  Ankyrin repeat
 IPR002153  Transient receptor potential channel, canonical
 IPR004729  Transient receptor potential channel
 IPR005460  Transient receptor potential channel, canonical 4
 IPR005821  Ion transport domain
 IPR013555  Transient receptor ion channel domain
 IPR020683  Ankyrin repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006828 manganese ion transport IBA
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration IBA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005262 calcium channel activity IEA
 molecular_functionGO:0015279 store-operated calcium channel activity IBA


Pathways (from Reactome)
Pathway description
TRP channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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