ENSDARG00000102017


Danio rerio

Features
Gene ID: ENSDARG00000102017
  
Biological name :trpc4b
  
Synonyms : transient receptor potential cation channel, subfamily C, member 4b / trpc4b
  
Possible biological names infered from orthology : Q9QUQ5 / Q9UBN4 / transient receptor potential cation channel subfamily C member 4 / TRPC4
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 32642878
Gene end: 32700782
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000155234
Ensembl peptide - ENSDARP00000136413
NCBI entrez gene - 102725536     See in Manteia.
RefSeq - NM_001289881
RefSeq Peptide - NP_001276810
swissprot - A0A0R4IM91
ZFIN ID - ZDB-GENE-120329-1
Ensembl - ENSDARG00000102017
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRPC4ENSGALG00000017044Gallus gallus
 TRPC4ENSG00000133107Homo sapiens
 Trpc4ENSMUSG00000027748Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trpc4a / transient receptor potential cation channel, subfamily C, member 4a / TRPC4* / Q9QUQ5* / Q9UBN4* / transient receptor potential cation channel subfamily C member 4*ENSDARG0000007050776
trpc5b / transient receptor potential cation channel, subfamily C, member 5b / TRPC5* / Q9QX29* / Q9UL62* / transient receptor potential cation channel subfamily C member 5*ENSDARG0000006083762
trpc5a / transient receptor potential cation channel, subfamily C, member 5a / TRPC5* / Q9QX29* / Q9UL62* / transient receptor potential cation channel subfamily C member 5*ENSDARG0000007050448
trpc1 / transient receptor potential cation channel, subfamily C, member 1 / P48995*ENSDARG0000006120338
trpc7a / transient receptor potential cation channel, subfamily C, member 7a / TRPC7* / Q9HCX4* / Q9WVC5* / transient receptor potential cation channel subfamily C member 7*ENSDARG0000002752334
trpc6a / transient receptor potential cation channel, subfamily C, member 6a / TRPC6* / Q61143* / Q9Y210* / transient receptor potential cation channel subfamily C member 6*ENSDARG0000005662533
trpc6b / transient receptor potential cation channel, subfamily C, member 6b / TRPC6* / Q61143* / Q9Y210* / transient receptor potential cation channel subfamily C member 6*ENSDARG0000006773033
trpc3 / transient receptor potential cation channel, subfamily C, member 3 / Q13507*ENSDARG0000009829132
trpc2b / transient receptor potential cation channel, subfamily C, member 2b / Trpc2* / Q9R244* / Xntrpc* / Short transient receptor potential channel 2 * / Xndc1-transient receptor potenti...ENSDARG0000000334429
trpc7b / transient receptor potential cation channel, subfamily C, member 7b / TRPC7* / Q9HCX4* / transient receptor potential cation channel subfamily C member 7*ENSDARG0000007946929
trpc2a / transient receptor potential cation channel, subfamily C, member 2a / Trpc2* / Q9R244* / Xntrpc* / Short transient receptor potential channel 2 * / Xndc1-transient receptor potenti...ENSDARG0000003906527


Protein motifs (from Interpro)
Interpro ID Name
 IPR002110  Ankyrin repeat
 IPR002153  Transient receptor potential channel, canonical
 IPR004729  Transient receptor potential channel
 IPR005460  Transient receptor potential channel, canonical 4
 IPR005821  Ion transport domain
 IPR013555  Transient receptor ion channel domain
 IPR020683  Ankyrin repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005262 calcium channel activity IEA


Pathways (from Reactome)
Pathway description
TRP channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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