ENSDARG00000070828


Danio rerio

Features
Gene ID: ENSDARG00000070828
  
Biological name :actl6a
  
Synonyms : actin-like 6A / actl6a
  
Possible biological names infered from orthology : O96019 / Q9Z2N8
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 29386728
Gene end: 29395704
  
Corresponding Affymetrix probe sets: Dr.1969.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000095078
NCBI entrez gene - 192313     See in Manteia.
RefSeq - NM_173240
RefSeq Peptide - NP_775347
swissprot - F1QM20
ZFIN ID - ZDB-GENE-020419-36
Ensembl - ENSDARG00000070828
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ACTL6AENSGALG00000009061Gallus gallus
 ACTL6AENSG00000136518Homo sapiens
 Actl6aENSMUSG00000027671Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
actl6b / actin-like 6B / O94805* / Q99MR0*ENSDARG0000003410781


Protein motifs (from Interpro)
Interpro ID Name
 IPR004000  Actin family
 IPR004001  Actin, conserved site
 IPR029912  Actin-like protein 6A


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0043044 ATP-dependent chromatin remodeling IEA
 cellular_componentGO:0071564 npBAF complex IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
UCH proteinases
DNA Damage Recognition in GG-NER
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
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 ZFA:0001094 whole organism whole organism necrotic , abnormal
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 ZFA:0001114 head head decreased size , abnormal
head edematous , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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