ENSDARG00000070867


Danio rerio

Features
Gene ID: ENSDARG00000070867
  
Biological name :smx5
  
Synonyms : smx5
  
Possible biological names infered from orthology : LSM2 / LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated / O35900 / Q9Y333
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 28205284
Gene end: 28207746
  
Corresponding Affymetrix probe sets: Dr.24995.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000132667
NCBI entrez gene - 57924     See in Manteia.
swissprot - Q5RKP8
ZFIN ID - ZDB-GENE-000616-10
Ensembl - ENSDARG00000070867
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LSM2ENSG00000204392Homo sapiens
 Lsm2ENSMUSG00000007050Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smx5 / si:ch73-14h10.2 / LSM2 (1 of many) / LSM2* / O35900* / Q9Y333* / LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated*ENSDARG00000103066100


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR016654  U6 snRNA-associated Sm-like protein LSm2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005688 U6 snRNP IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:1990726 Lsm1-7-Pat1 complex IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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