ENSMUSG00000007050


Mus musculus

Features
Gene ID: ENSMUSG00000007050
  
Biological name :Lsm2
  
Synonyms : Lsm2 / LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated / O35900
  
Possible biological names infered from orthology : Q9Y333
  
Species: Mus musculus
  
Chr. number: 17
Strand: 1
Band: B1
Gene start: 34981862
Gene end: 34985891
  
Corresponding Affymetrix probe sets: 10444595 (MoGene1.0st)   1451884_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000007266
Ensembl peptide - ENSMUSP00000109644
Ensembl peptide - ENSMUSP00000134403
NCBI entrez gene - 27756     See in Manteia.
MGI - MGI:90676
RefSeq - NM_001204274
RefSeq - NM_001110101
RefSeq - NM_001204273
RefSeq - NM_030597
RefSeq Peptide - NP_085100
RefSeq Peptide - NP_001103571
RefSeq Peptide - NP_001191202
RefSeq Peptide - NP_001191203
swissprot - G3UZ96
swissprot - O35900
swissprot - O35901
swissprot - Q3U9X2
Ensembl - ENSMUSG00000007050
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smx5ENSDARG00000103066Danio rerio
 smx5ENSDARG00000070867Danio rerio
 LSM2ENSG00000204392Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR016654  U6 snRNA-associated Sm-like protein LSm2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000244 spliceosomal tri-snRNP complex assembly ISO
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006402 mRNA catabolic process ISO
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005688 U6 snRNP IEA
 cellular_componentGO:0005737 cytoplasm ISO
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 cellular_componentGO:1990726 Lsm1-7-Pat1 complex IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017160 Ral GTPase binding IEA
 molecular_functionGO:0019901 protein kinase binding IDA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr