ENSDARG00000103066


Danio rerio

Features
Gene ID: ENSDARG00000103066
  
Biological name :LSM2 (1 of many)
  
Synonyms : LSM2 (1 of many) / si:ch73-14h10.2 / smx5
  
Possible biological names infered from orthology : LSM2 / LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated / O35900 / Q9Y333
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 28205296
Gene end: 28211513
  
Corresponding Affymetrix probe sets: Dr.15190.1.S1_at (Zebrafish Array)   Dr.24995.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000131633
Ensembl peptide - ENSDARP00000156037
Ensembl peptide - ENSDARP00000140740
Ensembl peptide - ENSDARP00000131699
Ensembl peptide - ENSDARP00000130821
NCBI entrez gene - 57924     See in Manteia.
swissprot - A0A0R4IWH4
swissprot - A0A0R4IES0
swissprot - A0A0R4IA70
ZFIN ID - ZDB-GENE-000616-10
ZFIN ID - ZDB-GENE-141222-67
Ensembl - ENSDARG00000103066
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LSM2ENSG00000204392Homo sapiens
 Lsm2ENSMUSG00000007050Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smx5 / LSM2* / O35900* / Q9Y333* / LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated*ENSDARG00000070867100


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR016654  U6 snRNA-associated Sm-like protein LSm2


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr