ENSDARG00000071288


Danio rerio

Features
Gene ID: ENSDARG00000071288
  
Biological name :samhd1
  
Synonyms : SAM domain and HD domain 1 / samhd1
  
Possible biological names infered from orthology : Q9Y3Z3 / SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 526502
Gene end: 545942
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000096087
NCBI entrez gene - 553453     See in Manteia.
RefSeq - NM_001159933
RefSeq - XM_009296551
RefSeq Peptide - NP_001153405
swissprot - F1R861
ZFIN ID - ZDB-GENE-090313-386
Ensembl - ENSDARG00000071288
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SAMHD1ENSGALG00000001231Gallus gallus
 Q9Y3Z3ENSG00000101347Homo sapiens
 Samhd1ENSMUSG00000027639Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch73-236c18.9ENSDARG0000009942143
si:ch73-236c18.8ENSDARG0000010462642


Protein motifs (from Interpro)
Interpro ID Name
 IPR001660  Sterile alpha motif domain
 IPR003607  HD/PDEase domain
 IPR006674  HD domain
 IPR013761  Sterile alpha motif/pointed domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Nucleobase catabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000007 blood blood accumulation hindbrain , abnormal
Show

 ZFA:0000008 brain brain hemorrhagic , abnormal
Show

 ZFA:0000110 fourth ventricle fourth ventricle swollen , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000071288 samhd1 / SAM domain and HD domain 1 / Q9Y3Z3* / SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1*  / complex






 

1 s.

 
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contact: otassy@igbmc.fr