ENSG00000101347


Homo sapiens

Features
Gene ID: ENSG00000101347
  
Biological name :SAMHD1
  
Synonyms : Q9Y3Z3 / SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 / SAMHD1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: q11.23
Gene start: 36889773
Gene end: 36951901
  
Corresponding Affymetrix probe sets: 1559882_at (Human Genome U133 Plus 2.0 Array)   1559883_s_at (Human Genome U133 Plus 2.0 Array)   204502_at (Human Genome U133 Plus 2.0 Array)   234987_at (Human Genome U133 Plus 2.0 Array)   235529_x_at (Human Genome U133 Plus 2.0 Array)   235964_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000496075
Ensembl peptide - ENSP00000496474
Ensembl peptide - ENSP00000262878
Ensembl peptide - ENSP00000493536
Ensembl peptide - ENSP00000493810
Ensembl peptide - ENSP00000493928
Ensembl peptide - ENSP00000494271
Ensembl peptide - ENSP00000494313
Ensembl peptide - ENSP00000494354
Ensembl peptide - ENSP00000494436
Ensembl peptide - ENSP00000494520
Ensembl peptide - ENSP00000494823
Ensembl peptide - ENSP00000494979
Ensembl peptide - ENSP00000495381
Ensembl peptide - ENSP00000495432
Ensembl peptide - ENSP00000495448
Ensembl peptide - ENSP00000495645
Ensembl peptide - ENSP00000495667
Ensembl peptide - ENSP00000495737
NCBI entrez gene - 25939     See in Manteia.
OMIM - 606754
RefSeq - NM_015474
RefSeq - XM_005260384
RefSeq - XM_011528761
RefSeq Peptide - NP_056289
swissprot - Q9Y3Z3
Ensembl - ENSG00000101347
  
Related genetic diseases (OMIM): 612952 - Aicardi-Goutieres syndrome 5, 612952
  614415 - ?Chilblain lupus 2, 614415
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 samhd1ENSDARG00000071288Danio rerio
 SAMHD1ENSGALG00000001231Gallus gallus
 Samhd1ENSMUSG00000027639Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001660  Sterile alpha motif domain
 IPR003607  HD/PDEase domain
 IPR006674  HD domain
 IPR013761  Sterile alpha motif/pointed domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006203 dGTP catabolic process IDA
 biological_processGO:0006955 immune response NAS
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0009264 deoxyribonucleotide catabolic process TAS
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0045088 regulation of innate immune response IMP
 biological_processGO:0046061 dATP catabolic process IDA
 biological_processGO:0051289 protein homotetramerization IDA
 biological_processGO:0051607 defense response to virus IMP
 biological_processGO:0060337 type I interferon signaling pathway TAS
 biological_processGO:0090501 RNA phosphodiester bond hydrolysis IEA
 cellular_componentGO:0005622 intracellular NAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005886 plasma membrane IDA
 molecular_functionGO:0003676 nucleic acid binding IDA
 molecular_functionGO:0003723 RNA binding IDA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004540 ribonuclease activity IDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008270 zinc ion binding IDA
 molecular_functionGO:0008832 dGTPase activity IDA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016793 triphosphoric monoester hydrolase activity EXP
 molecular_functionGO:0032567 dGTP binding IDA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nucleobase catabolism
Interferon alpha/beta signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000625 Eyelid, cleft "A short discontinuity of the margin of the lower or upper eyelid." [pmid:19125427]
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 HP:0000737 Irritability 
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 HP:0000958 Dry skin 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001357 Plagiocephaly "An asymmetric head shape often resulting from premature closure of only one of the coronal sutures." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001873 Thrombocytopenia 
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 HP:0002132 Porencephaly 
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 HP:0002135 Basal ganglia calcification "Calcification affecting one or more structures of the basal ganglia." [HPO:curators]
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 HP:0002139 Arrhinencephaly 
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002352 Leukoencephalopathy 
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 HP:0002415 Leukodystrophy 
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 HP:0003040 Arthropathy 
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 HP:0003828 Variable expressivity 
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0007321 Deep white matter hypodensities 
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 HP:0008872 Feeding problems in infancy 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0009710 Chilblain lesions "Chilblains are acral ulcers." [HPO:curators]
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 HP:0040189 Scaling skin "Refers to the loss of the outer layer of the epidermis in large, scale-like flakes." []
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 HP:0200149 CSF lymphocytosis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000101347 Q9Y3Z3 / SAMHD1 / SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1  / complex






 

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