ENSDARG00000071478


Danio rerio

Features
Gene ID: ENSDARG00000071478
  
Biological name :lnx2b
  
Synonyms : ligand of numb-protein X 2b / lnx2b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 32918172
Gene end: 32945931
  
Corresponding Affymetrix probe sets: Dr.25483.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000118069
Ensembl peptide - ENSDARP00000155010
Ensembl peptide - ENSDARP00000146281
Ensembl peptide - ENSDARP00000096499
NCBI entrez gene - 564464     See in Manteia.
RefSeq - NM_212940
RefSeq - XM_005173253
RefSeq Peptide - NP_998105
swissprot - E9QGL1
swissprot - Q6NW71
swissprot - A4VCF7
ZFIN ID - ZDB-GENE-040426-2500
Ensembl - ENSDARG00000071478
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000007703Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lnx2a / ligand of numb-protein X 2a / LNX2* / Q8N448* / Q91XL2* / ligand of numb-protein X 2*ENSDARG0000002917747
lnx1 / ligand of numb-protein X 1 / O70263* / Q8TBB1*ENSDARG0000004332342
pdzd2 / PDZ domain containing 2 / O15018*ENSDARG0000005980120
il16 / interleukin 16 / O54824* / Q14005* / Pro-interleukin-16 Interleukin-16*ENSDARG0000010290818
patj / PATJ, crumbs cell polarity complex component / Q63ZW7* / Q8NI35* / Mus musculus PATJ, crumbs cell polarity complex component (Patj), transcript variant 5, mRNA.*ENSDARG0000002496418
pard3ab / par-3 family cell polarity regulator alpha, b / PARD3* / Q8TEW0* / Q99NH2* / par-3 family cell polarity regulator*ENSDARG0000001058314
si:dkey-92j12.5 / MPDZ* / Q8VBX6* / O75970* / multiple PDZ domain protein* / multiple PDZ domain crumbs cell polarity complex component*ENSDARG0000009467713
pard3ba / si:ch1073-345a8.1 / PARD3B* / Q8TEW8* / par-3 family cell polarity regulator beta*ENSDARG0000009267111
pard3bb / par-3 family cell polarity regulator beta b / PARD3B* / Q9CSB4* / Q8TEW8* / par-3 family cell polarity regulator beta*ENSDARG000000345559
si:dkey-92i15.4ENSDARG000000783878
PARD3 (1 of many) / par-3 family cell polarity regulator / PARD3* / Q8TEW0*ENSDARG000001108048


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IPI
 biological_processGO:0031017 exocrine pancreas development IGI
 biological_processGO:0070936 protein K48-linked ubiquitination IDA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism wholly dorsalized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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