ENSDARG00000043323


Danio rerio

Features
Gene ID: ENSDARG00000043323
  
Biological name :lnx1
  
Synonyms : ligand of numb-protein X 1 / lnx1
  
Possible biological names infered from orthology : O70263 / Q8TBB1
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 22666548
Gene end: 22740675
  
Corresponding Affymetrix probe sets: Dr.11479.1.A1_at (Zebrafish Array)   NM_001075113_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000118247
Ensembl peptide - ENSDARP00000119355
NCBI entrez gene - 561226     See in Manteia.
RefSeq - NM_001075113
RefSeq Peptide - NP_001068581
swissprot - Q5RH21
swissprot - Q5RH22
ZFIN ID - ZDB-GENE-030131-9439
Ensembl - ENSDARG00000043323
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LNX1ENSGALG00000013940Gallus gallus
 LNX1ENSG00000072201Homo sapiens
 Lnx1ENSMUSG00000029228Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lnx2a / ligand of numb-protein X 2a / LNX2* / Q8N448* / Q91XL2* / ligand of numb-protein X 2*ENSDARG0000002917743
lnx2b / ligand of numb-protein X 2bENSDARG0000007147838
pdzd2 / PDZ domain containing 2 / O15018*ENSDARG0000005980119
patj / PATJ, crumbs cell polarity complex component / Q63ZW7* / Q8NI35* / Mus musculus PATJ, crumbs cell polarity complex component (Patj), transcript variant 5, mRNA.*ENSDARG0000002496416
il16 / interleukin 16 / O54824* / Q14005* / Pro-interleukin-16 Interleukin-16*ENSDARG0000010290816
pard3ab / par-3 family cell polarity regulator alpha, b / PARD3* / Q8TEW0* / Q99NH2* / par-3 family cell polarity regulator*ENSDARG0000001058315
si:dkey-92j12.5 / MPDZ* / Q8VBX6* / O75970* / multiple PDZ domain protein* / multiple PDZ domain crumbs cell polarity complex component*ENSDARG0000009467712
pard3ba / si:ch1073-345a8.1 / PARD3B* / Q8TEW8* / par-3 family cell polarity regulator beta*ENSDARG0000009267112
pard3bb / par-3 family cell polarity regulator beta b / PARD3B* / Q9CSB4* / Q8TEW8* / par-3 family cell polarity regulator beta*ENSDARG000000345559
PARD3 (1 of many) / par-3 family cell polarity regulator / PARD3* / Q8TEW0*ENSDARG000001108048
si:dkey-92i15.4ENSDARG000000783877


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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