ENSGALG00000013940


Gallus gallus

Features
Gene ID: ENSGALG00000013940
  
Biological name :LNX1
  
Synonyms : ligand of numb-protein X 1 / LNX1
  
Possible biological names infered from orthology : O70263 / Q8TBB1
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 66070910
Gene end: 66131999
  
Corresponding Affymetrix probe sets: Gga.10912.1.S1_at (Chicken Array)   GgaAffx.24311.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000022552
NCBI entrez gene - 422752     See in Manteia.
RefSeq - XM_004936027
RefSeq - XM_004936028
RefSeq - XM_015285525
RefSeq - XM_015285526
RefSeq - XM_015285527
RefSeq - XM_015285528
RefSeq - XM_015285529
RefSeq - XM_015285530
RefSeq - XM_015285531
RefSeq - XM_420707
RefSeq - XM_004936026
swissprot - F1NVY8
Ensembl - ENSGALG00000013940
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lnx1ENSDARG00000043323Danio rerio
 LNX1ENSG00000072201Homo sapiens
 Lnx1ENSMUSG00000029228Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ENSGALG0000000770342
LNX2* / Q8N448* / Q91XL2* / ligand of numb-protein X 2*ENSGALG0000001709636
LNX2* / Q8N448* / Q91XL2* / ligand of numb-protein X 2*ENSGALG0000003886436
MPDZ / multiple PDZ domain crumbs cell polarity complex component / O75970* / Q8VBX6* / multiple PDZ domain protein*ENSGALG0000000584617
IL16 / interleukin 16 / O54824* / Q14005* / Pro-interleukin-16 Interleukin-16*ENSGALG0000000638816
PARD3 / partitioning defective 3 homolog / Q8TEW0* / Q99NH2* / par-3 family cell polarity regulator*ENSGALG0000000712514
PARD3B / par-3 family cell polarity regulator beta / Q8TEW8* / Q9CSB4*ENSGALG0000004264514
PDZD2* / O15018* / PDZ domain containing 2*ENSGALG0000004108912
PATJ* / Q63ZW7* / Q8NI35* / PATJ, crumbs cell polarity complex component* / Mus musculus PATJ, crumbs cell polarity complex component (Patj), transcript variant 5, mRNA.*ENSGALG0000001093410
PATJ* / Q63ZW7* / Q8NI35* / PATJ, crumbs cell polarity complex component* / Mus musculus PATJ, crumbs cell polarity complex component (Patj), transcript variant 5, mRNA.*ENSGALG000000389938
PDZD2* / O15018* / PDZ domain containing 2*ENSGALG000000028547


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0051260 protein homooligomerization IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0030165 PDZ domain binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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