ENSDARG00000073737


Danio rerio

Features
Gene ID: ENSDARG00000073737
  
Biological name :suds3
  
Synonyms : SDS3 homolog, SIN3A corepressor complex component / suds3
  
Possible biological names infered from orthology : Q8BR65 / Q9H7L9 / Sin3 histone deacetylase corepressor complex component SDS3
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 15495351
Gene end: 15513778
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000103896
Ensembl peptide - ENSDARP00000101282
NCBI entrez gene - 445099     See in Manteia.
RefSeq - NM_001003493
RefSeq Peptide - NP_001003493
swissprot - B8JJJ1
swissprot - Q6DBU7
ZFIN ID - ZDB-GENE-040801-236
Ensembl - ENSDARG00000073737
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SUDS3ENSGALG00000007393Gallus gallus
 SUDS3ENSG00000111707Homo sapiens
 Suds3ENSMUSG00000066900Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR013907  Sds3-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IBA
 biological_processGO:0016575 histone deacetylation IBA
 cellular_componentGO:0070822 Sin3-type complex IBA
 molecular_functionGO:0004407 histone deacetylase activity IBA
 molecular_functionGO:0042826 histone deacetylase binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0001114 head head circular , abnormal
head decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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