ENSDARG00000074955


Danio rerio

Features
Gene ID: ENSDARG00000074955
  
Biological name :nup98
  
Synonyms : nucleoporin 98 / nup98
  
Possible biological names infered from orthology : P52948
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 40353543
Gene end: 40398932
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000010304
Ensembl peptide - ENSDARP00000131290
Ensembl peptide - ENSDARP00000118041
Ensembl peptide - ENSDARP00000110413
NCBI entrez gene - 777756     See in Manteia.
RefSeq - NM_200685
RefSeq Peptide - NP_956979
swissprot - A0A0R4IAQ8
swissprot - E9QGM4
swissprot - F1R4A0
swissprot - E7F981
ZFIN ID - ZDB-GENE-040426-1180
Ensembl - ENSDARG00000074955
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NUP98ENSGALG00000040018Gallus gallus
 NUP98ENSG00000110713Homo sapiens
 Nup98ENSMUSG00000063550Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007230  Peptidase S59, nucleoporin
 IPR021967  Nuclear protein 96
 IPR025574  Nucleoporin FG repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000973 posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery IBA
 biological_processGO:0006405 RNA export from nucleus IBA
 biological_processGO:0006606 protein import into nucleus IBA
 biological_processGO:0006913 nucleocytoplasmic transport IEA
 biological_processGO:0034398 telomere tethering at nuclear periphery IBA
 biological_processGO:0048484 enteric nervous system development IMP
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0044614 nuclear pore cytoplasmic filaments IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0008139 nuclear localization sequence binding IBA
 molecular_functionGO:0017056 structural constituent of nuclear pore IEA


Pathways (from Reactome)
Pathway description
Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
Transcriptional regulation by small RNAs
RHO GTPases Activate Formins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001338 intestine intestine distal region lacks all parts of type enteric neuron , abnormal
Show

 ZFA:0005021 cerebellar central artery cerebellar central artery hemorrhagic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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