ENSGALG00000040018


Gallus gallus

Features
Gene ID: ENSGALG00000040018
  
Biological name :NUP98
  
Synonyms : nucleoporin 98 / NUP98
  
Possible biological names infered from orthology : P52948
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 194781078
Gene end: 194818468
  
Corresponding Affymetrix probe sets: Gga.15891.1.S1_at (Chicken Array)   Gga.5221.1.S1_at (Chicken Array)   Gga.5221.2.S1_at (Chicken Array)   GgaAffx.24220.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046130
Ensembl peptide - ENSGALP00000050065
NCBI entrez gene - 430616     See in Manteia.
RefSeq - XM_015280951
RefSeq - XM_015280952
RefSeq - XM_015280953
RefSeq - XM_015280954
swissprot - A0A1D5PBD8
swissprot - A0A1D5P0F3
Ensembl - ENSGALG00000040018
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nup98ENSDARG00000074955Danio rerio
 NUP98ENSG00000110713Homo sapiens
 Nup98ENSMUSG00000063550Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007230  Peptidase S59, nucleoporin
 IPR021967  Nuclear protein 96
 IPR025574  Nucleoporin FG repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006913 nucleocytoplasmic transport IEA
 biological_processGO:0048026 positive regulation of mRNA splicing, via spliceosome IEA
 biological_processGO:0051292 nuclear pore complex assembly IEA
 cellular_componentGO:0000776 kinetochore IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0031080 nuclear pore outer ring IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 cellular_componentGO:0034399 nuclear periphery IEA
 cellular_componentGO:0042405 nuclear inclusion body IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0044615 nuclear pore nuclear basket IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0017056 structural constituent of nuclear pore IEA
 molecular_functionGO:1990841 promoter-specific chromatin binding IEA


Pathways (from Reactome)
Pathway description
Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
Transport of Mature mRNA derived from an Intron-Containing Transcript
snRNP Assembly
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of DNA replication proteins
Transcriptional regulation by small RNAs
RHO GTPases Activate Formins
Mitotic Prometaphase


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr