ENSDARG00000075217


Danio rerio

Features
Gene ID: ENSDARG00000075217
  
Biological name :tdrd12
  
Synonyms : tdrd12 / tudor domain containing 12
  
Possible biological names infered from orthology : Putative ATP-dependent RNA helicase TDRD12 / Q587J7 / Q9CWU0
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 37161532
Gene end: 37186894
  
Corresponding Affymetrix probe sets: Dr.16001.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000127017
Ensembl peptide - ENSDARP00000156644
Ensembl peptide - ENSDARP00000157601
swissprot - R4GEV4
ZFIN ID - ZDB-GENE-121214-348
Ensembl - ENSDARG00000075217
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000004704Gallus gallus
 Q587J7ENSG00000173809Homo sapiens
 Q9CWU0ENSMUSG00000030491Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002999  Tudor domain
 IPR007052  CS domain
 IPR008978  HSP20-like chaperone
 IPR011545  DEAD/DEAH box helicase domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR035437  SNase-like, OB-fold superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000242 male organism male organism increased amount , abnormal
male organism sterile , abnormal
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 ZFA:0000413 gonad gonad decreased amount , abnormal
gonad germ line cell absent , abnormal
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 ZFA:0000598 testis testis atrophied , abnormal
testis decreased amount , abnormal
testis germ line cell absent , abnormal
testis apoptotic process increased occurrence , abnormal
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 ZFA:0001109 oocyte oocyte absent , abnormal
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 ZFA:0005272 immature gonad immature gonad decreased amount , abnormal
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 ZFA:0005878 oogonia oogonia absent , abnormal
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 ZFA:0009007 spermatogonium spermatogonium increased amount , abnormal
spermatogonium apoptotic , abnormal
spermatogonium deformed , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr