ENSDARG00000075670


Danio rerio

Features
Gene ID: ENSDARG00000075670
  
Biological name :rereb
  
Synonyms : arginine-glutamic acid dipeptide (RE) repeats b / rereb
  
Possible biological names infered from orthology : arginine-glutamic acid dipeptide repeats / Arginine-glutamic acid dipeptide repeats protein / Q80TZ9 / Q9P2R6 / RERE
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 40671336
Gene end: 40689042
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000101018
Ensembl peptide - ENSDARP00000153834
NCBI entrez gene - 799473     See in Manteia.
swissprot - E7FCG5
ZFIN ID - ZDB-GENE-070212-3
Ensembl - ENSDARG00000075670
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 REREENSGALG00000002232Gallus gallus
 REREENSG00000142599Homo sapiens
 RereENSMUSG00000039852Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rerea / arginine-glutamic acid dipeptide (RE) repeats a / RERE* / Q80TZ9* / Q9P2R6* / arginine-glutamic acid dipeptide repeats* / Arginine-glutamic acid dipeptide repeats protein *ENSDARG0000007735361
atn1 / atrophin 1 / P54259* / O35126* / Gm45234* / predicted gene 45234*ENSDARG0000009206727
mta1 / metastasis associated 1 / Q13330* / Q8K4B0* / Mus musculus metastasis associated 1 (Mta1), transcript variant 2, mRNA.*ENSDARG000000071989
mta2 / metastasis associated 1 family, member 2 / O94776* / Q9R190* / Metastasis-associated protein MTA2 *ENSDARG000000130319
mta3 / metastasis associated 1 family, member 3 / Q924K8* / Q9BTC8* / Metastasis-associated protein MTA3 *ENSDARG000000549038


Protein motifs (from Interpro)
Interpro ID Name
 IPR000679  Zinc finger, GATA-type
 IPR000949  ELM2 domain
 IPR001005  SANT/Myb domain
 IPR002951  Atrophin-like
 IPR009057  Homeobox-like domain superfamily
 IPR013088  Zinc finger, NHR/GATA-type
 IPR017884  SANT domain
 IPR017993  Atrophin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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