ENSDARG00000077353


Danio rerio

Features
Gene ID: ENSDARG00000077353
  
Biological name :rerea
  
Synonyms : arginine-glutamic acid dipeptide (RE) repeats a / rerea
  
Possible biological names infered from orthology : arginine-glutamic acid dipeptide repeats / Arginine-glutamic acid dipeptide repeats protein / Q80TZ9 / Q9P2R6 / RERE
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 22785375
Gene end: 22926495
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000102789
Ensembl peptide - ENSDARP00000121944
Ensembl peptide - ENSDARP00000117039
NCBI entrez gene - 569081     See in Manteia.
swissprot - E9QE77
swissprot - E7F226
swissprot - F1QQN6
ZFIN ID - ZDB-GENE-060718-1
Ensembl - ENSDARG00000077353
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 REREENSGALG00000002232Gallus gallus
 REREENSG00000142599Homo sapiens
 RereENSMUSG00000039852Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rereb / arginine-glutamic acid dipeptide (RE) repeats b / RERE* / Q80TZ9* / Q9P2R6* / arginine-glutamic acid dipeptide repeats* / Arginine-glutamic acid dipeptide repeats protein *ENSDARG0000007567048
atn1 / atrophin 1 / P54259* / O35126* / Gm45234* / predicted gene 45234*ENSDARG0000009206722
mta1 / metastasis associated 1 / Q13330* / Q8K4B0* / Mus musculus metastasis associated 1 (Mta1), transcript variant 2, mRNA.*ENSDARG0000000719810
mta2 / metastasis associated 1 family, member 2 / O94776* / Q9R190* / Metastasis-associated protein MTA2 *ENSDARG000000130319
mta3 / metastasis associated 1 family, member 3 / Q924K8* / Q9BTC8* / Metastasis-associated protein MTA3 *ENSDARG000000549038


Protein motifs (from Interpro)
Interpro ID Name
 IPR000679  Zinc finger, GATA-type
 IPR000949  ELM2 domain
 IPR001005  SANT/Myb domain
 IPR001025  Bromo adjacent homology (BAH) domain
 IPR002951  Atrophin-like
 IPR009057  Homeobox-like domain superfamily
 IPR013088  Zinc finger, NHR/GATA-type
 IPR017884  SANT domain
 IPR017993  Atrophin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0031063 regulation of histone deacetylation IMP
 biological_processGO:0040036 regulation of fibroblast growth factor receptor signaling pathway IMP
 biological_processGO:0045879 negative regulation of smoothened signaling pathway IMP
 biological_processGO:0048839 inner ear development IMP
 biological_processGO:0051216 cartilage development IMP
 biological_processGO:0060037 pharyngeal system development IMP
 biological_processGO:0060536 cartilage morphogenesis IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain quality , abnormal
brain degenerate , abnormal
brain decreased size , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary decreased thickness , abnormal
Show

 ZFA:0000079 telencephalon telencephalon wholly dorsalized , abnormal
Show

 ZFA:0000095 pharyngeal arch 3-7 skeleton pharyngeal arch 3-7 skeleton quality , abnormal
pharyngeal arch 3-7 skeleton absent , abnormal
pharyngeal arch 3-7 skeleton decreased size , abnormal
Show

 ZFA:0000107 eye eye quality , abnormal
eye decreased size , abnormal
Show

 ZFA:0000152 retina retina fused with cranial nerve II , abnormal
retina disorganized , abnormal
Show

 ZFA:0000217 inner ear inner ear quality , abnormal
inner ear malformed , abnormal
inner ear morphology , abnormal
Show

 ZFA:0000282 sensory system sensory system quality , abnormal
Show

 ZFA:0000354 gill gill absent , abnormal
Show

 ZFA:0000396 nervous system nervous system quality , abnormal
Show

 ZFA:0000431 semicircular canal semicircular canal quality , abnormal
Show

 ZFA:0001094 whole organism whole organism lethal (sensu genetics) , abnormal
whole organism viability , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin morphology , abnormal
pectoral fin decreased size , abnormal
Show

 ZFA:0001205 Meckel s cartilage Meckels cartilage sloped downward , abnormal
Meckels cartilage cartilage development disrupted , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton malformed , abnormal
mandibular arch skeleton morphology , abnormal
mandibular arch skeleton decreased size , abnormal
mandibular arch skeleton decreased length , abnormal
Show

 ZFA:0001228 pharyngeal arch 3 skeleton pharyngeal arch 3 skeleton absent , abnormal
Show

 ZFA:0001229 pharyngeal arch 7 skeleton pharyngeal arch 7 skeleton decreased size , abnormal
Show

 ZFA:0001230 pharyngeal arch 6 skeleton pharyngeal arch 6 skeleton absent , abnormal
Show

 ZFA:0001231 pharyngeal arch 4 skeleton pharyngeal arch 4 skeleton absent , abnormal
Show

 ZFA:0001232 pharyngeal arch 5 skeleton pharyngeal arch 5 skeleton absent , abnormal
Show

 ZFA:0001272 palatoquadrate arch palatoquadrate arch quality , abnormal
palatoquadrate arch morphology , abnormal
Show

 ZFA:0001273 ventral mandibular arch ventral mandibular arch fused with palatoquadrate arch , abnormal
Show

 ZFA:0001276 pharyngeal arch 2 skeleton pharyngeal arch 2 skeleton inverted , abnormal
pharyngeal arch 2 skeleton decreased size , abnormal
Show

 ZFA:0001306 pharyngeal arch pharyngeal arch morphology , abnormal
Show

 ZFA:0001399 palatoquadrate cartilage palatoquadrate cartilage quality , abnormal
palatoquadrate cartilage cartilage development disrupted , abnormal
Show

 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage quality , abnormal
ceratohyal cartilage decreased size , abnormal
ceratohyal cartilage kinked , abnormal
ceratohyal cartilage mislocalised posteriorly , abnormal
Show

 ZFA:0001423 parachordal cartilage parachordal cartilage decreased size , abnormal
Show

 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage chondrocyte circular , abnormal
Show

 ZFA:0001580 neurocranium neurocranium decreased size , abnormal
Show

 ZFA:0001613 pharyngeal arch 3-7 pharyngeal arch 3-7 decreased size , abnormal
Show

 ZFA:0001617 otolith otolith quality , abnormal
Show

 ZFA:0009366 hair cell hair cell quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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