ENSDARG00000076306


Danio rerio

Features
Gene ID: ENSDARG00000076306
  
Biological name :loxl3a
  
Synonyms : F1RD85 / loxl3a / lysyl oxidase-like 3a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 5866894
Gene end: 5916580
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000054865
Ensembl peptide - ENSDARP00000127639
Ensembl peptide - ENSDARP00000157309
NCBI entrez gene - 568839     See in Manteia.
RefSeq - NM_001199870
RefSeq Peptide - NP_001186799
swissprot - F1RD85
ZFIN ID - ZDB-GENE-070818-2
Ensembl - ENSDARG00000076306
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
B8A4W9 / loxl3b / lysyl oxidase-like 3bENSDARG0000003956371
F1QQC3 / loxl2a / lysyl oxidase-like 2a / LOXL2* / Q9Y4K0* / lysyl oxidase like 2*ENSDARG0000004401053
loxl2b / A1L1V4 / lysyl oxidase-like 2b / LOXL2* / Q9Y4K0* / P58022* / lysyl oxidase like 2* / Lysyl oxidase homolog 2 *ENSDARG0000004407452
loxl4 / lysyl oxidase-like 4ENSDARG0000002508948
si:cabz01100188.1ENSDARG0000010544225
loxl1 / lysyl oxidase-like 1 / Q08397*ENSDARG0000005445118
loxa / lysyl oxidase aENSDARG0000000325917
loxl5b / lysyl oxidase-like 5bENSDARG0000007690417
loxl5a / lysyl oxidase-like 5aENSDARG0000007168016
si:dkey-21h14.3ENSDARG0000009604711
si:dkey-242e21.3 / CD6* / P30203* / Q61003* / CD6 molecule* / T-cell differentiation antigen CD6 *ENSDARG0000007572311
scara5 / Q5RFW0 / scavenger receptor class A, member 5 (putative) / Q8K299* / Q6ZMJ2* / scavenger receptor class A member 5*ENSDARG000000104259
si:ch211-150o23.3ENSDARG000000785029
marco / macrophage receptor with collagenous structure / Q9UEW3*ENSDARG000000592949
CT583642.2ENSDARG000001113156


Protein motifs (from Interpro)
Interpro ID Name
 IPR001190  SRCR domain
 IPR001695  Lysyl oxidase
 IPR017448  SRCR-like domain
 IPR019828  Lysyl oxidase, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006898 receptor-mediated endocytosis IEA
 biological_processGO:0006954 inflammatory response ISS
 biological_processGO:0018057 peptidyl-lysine oxidation ISS
 biological_processGO:0021510 spinal cord development ISS
 biological_processGO:0030324 lung development ISS
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0060021 roof of mouth development ISS
 biological_processGO:0061053 somite development ISS
 biological_processGO:1905590 fibronectin fibril organization ISS
 biological_processGO:2000329 negative regulation of T-helper 17 cell lineage commitment ISS
 biological_processGO:2001046 positive regulation of integrin-mediated signaling pathway ISS
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space ISS
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0001968 fibronectin binding ISS
 molecular_functionGO:0004720 protein-lysine 6-oxidase activity ISS
 molecular_functionGO:0005044 scavenger receptor activity IEA
 molecular_functionGO:0005507 copper ion binding IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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