ENSDARG00000076627


Danio rerio

Features
Gene ID: ENSDARG00000076627
  
Biological name :smg9
  
Synonyms : smg9 / smg9 nonsense mediated mRNA decay factor
  
Possible biological names infered from orthology : Protein SMG9 / Q9DB90 / Q9H0W8
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 24721556
Gene end: 24733321
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000128140
Ensembl peptide - ENSDARP00000103685
NCBI entrez gene - 562557     See in Manteia.
RefSeq - XM_001923780
swissprot - X1WD43
swissprot - E7F7F6
ZFIN ID - ZDB-GENE-030131-9385
Ensembl - ENSDARG00000076627
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMG9ENSG00000105771Homo sapiens
 Smg9ENSMUSG00000002210Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019354  Smg8/Smg9
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA


Pathways (from Reactome)
Pathway description
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000061378 smg8 / SMG8 nonsense mediated mRNA decay factor / Q8ND04* / Q8VE18* / AC099850.2* / Protein SMG8 *  / complex
 ENSDARG00000054570 smg1 / SMG1 phosphatidylinositol 3-kinase-related kinase / Q8BKX6* / Q96Q15* / Serine/threonine-protein kinase SMG1 * / SMG1, nonsense mediated mRNA decay associated PI3K related kinase*  / complex






 

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contact: otassy@igbmc.fr