ENSDARG00000061378


Danio rerio

Features
Gene ID: ENSDARG00000061378
  
Biological name :smg8
  
Synonyms : smg8 / SMG8 nonsense mediated mRNA decay factor
  
Possible biological names infered from orthology : AC099850.2 / Protein SMG8 / Q8ND04 / Q8VE18
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 35238488
Gene end: 35248502
  
Corresponding Affymetrix probe sets: Dr.10577.1.A1_at (Zebrafish Array)   XM_690719_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000081911
NCBI entrez gene - 567424     See in Manteia.
RefSeq - XM_690719
swissprot - E7FBA3
ZFIN ID - ZDB-GENE-091204-279
Ensembl - ENSDARG00000061378
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000005093Gallus gallus
 AC099850.2ENSG00000265303Homo sapiens
 SMG8ENSG00000167447Homo sapiens
 Smg8ENSMUSG00000020495Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019354  Smg8/Smg9
 IPR028802  Protein SMG8


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA


Pathways (from Reactome)
Pathway description
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000054570 smg1 / SMG1 phosphatidylinositol 3-kinase-related kinase / Q8BKX6* / Q96Q15* / Serine/threonine-protein kinase SMG1 * / SMG1, nonsense mediated mRNA decay associated PI3K related kinase*  / complex
 ENSDARG00000076627 smg9 / smg9 nonsense mediated mRNA decay factor / Q9DB90* / Q9H0W8* / Protein SMG9 *  / complex






 

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