ENSGALG00000005093


Gallus gallus

Features
Gene ID: ENSGALG00000005093
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : AC099850.2 / Protein SMG8 / Q8ND04 / Q8VE18 / SMG8 / SMG8, nonsense mediated mRNA decay factor
  
Species: Gallus gallus
  
Chr. number: 19
Strand: 1
Band:
Gene start: 7209131
Gene end: 7215496
  
Corresponding Affymetrix probe sets: Gga.312.1.S2_at (Chicken Array)   Gga.6998.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008152
Ensembl peptide - ENSGALP00000064403
Ensembl peptide - ENSGALP00000062460
Ensembl peptide - ENSGALP00000052096
Ensembl peptide - ENSGALP00000049937
NCBI entrez gene - 417630     See in Manteia.
RefSeq - XM_415875
swissprot - E1BZ78
swissprot - A0A1L1RZV3
swissprot - A0A1L1RUG7
swissprot - A0A1D5PH20
swissprot - A0A1D5PB18
Ensembl - ENSGALG00000005093
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smg8ENSDARG00000061378Danio rerio
 AC099850.2ENSG00000265303Homo sapiens
 SMG8ENSG00000167447Homo sapiens
 Smg8ENSMUSG00000020495Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019354  Smg8/Smg9
 IPR028802  Protein SMG8


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA


Pathways (from Reactome)
Pathway description
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr