ENSG00000105771


Homo sapiens

Features
Gene ID: ENSG00000105771
  
Biological name :SMG9
  
Synonyms : Q9H0W8 / SMG9 / SMG9, nonsense mediated mRNA decay factor
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: q13.31
Gene start: 43727992
Gene end: 43754990
  
Corresponding Affymetrix probe sets: 221335_x_at (Human Genome U133 Plus 2.0 Array)   223188_at (Human Genome U133 Plus 2.0 Array)   233990_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000471442
Ensembl peptide - ENSP00000471398
Ensembl peptide - ENSP00000472684
Ensembl peptide - ENSP00000270066
Ensembl peptide - ENSP00000468941
Ensembl peptide - ENSP00000470031
Ensembl peptide - ENSP00000470451
Ensembl peptide - ENSP00000470541
NCBI entrez gene - 56006     See in Manteia.
OMIM - 613176
RefSeq - XM_017026988
RefSeq - NM_019108
RefSeq - XM_005259057
RefSeq - XM_011527113
RefSeq - XM_011527114
RefSeq - XM_011527115
RefSeq - XM_011527116
RefSeq Peptide - NP_061981
swissprot - Q9H0W8
swissprot - M0QX70
swissprot - M0QYR7
swissprot - M0QZC7
swissprot - M0QZH1
swissprot - M0R0U0
swissprot - A0A024R0Q0
swissprot - M0R2N0
Ensembl - ENSG00000105771
  
Related genetic diseases (OMIM): 616920 - Heart and brain malformation syndrome, 616920
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smg9ENSDARG00000076627Danio rerio
 Smg9ENSMUSG00000002210Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019354  Smg8/Smg9


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS
 biological_processGO:0001654 eye development ISS
 biological_processGO:0007420 brain development ISS
 biological_processGO:0007507 heart development ISS
 cellular_componentGO:0005622 intracellular IDA
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000179 Prominent lower lip "Increased thickness of the lower lip, leading to a prominent appearance of the lower lip." [HPO:curators]
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 HP:0000232 Everted lower lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000260 Wide anterior fontanel "Enlargement of the anterior fontanelle with respect to age-dependent norms." [HPO:curators]
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 HP:0000269 Prominent occiput 
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 HP:0000316 Hypertelorism 
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 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000505 Impaired vision 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000817 Poor eye contact 
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 HP:0001188 Clenched hands 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman s terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the body s ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:curators]
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 HP:0001510 Growth retardation 
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 HP:0001561 Polyhydramnios 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002059 Cerebral atrophy 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002188 Delayed myelination 
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 HP:0002283 Diffuse brain atrophy 
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005487 Prominent metopic suture "A prominent persistent frontal suture (metopic suture)." [HPO:curators]
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 HP:0006801 Hyperactive deep tendon reflexes 
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 HP:0007370 Aplasia/Hypoplasia of the corpus callosum "Absence or underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011611 Interrupted aortic arch "Non-continuity of the aortic arch with an atretic point or absent segment." [DDD:dbrown]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0410030 Cleft lip "A gap in the lip or lips." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000005007 UPF1 / Q92900 / UPF1, RNA helicase and ATPase  / complex / reaction
 ENSG00000167447 SMG8 / Q8ND04 / SMG8, nonsense mediated mRNA decay factor  / complex
 ENSG00000157106 SMG1 / Q96Q15 / SMG1, nonsense mediated mRNA decay associated PI3K related kinase  / complex






 

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