ENSDARG00000077126


Danio rerio

Features
Gene ID: ENSDARG00000077126
  
Biological name :snrnp70
  
Synonyms : small nuclear ribonucleoprotein 70 (U1) / snrnp70
  
Possible biological names infered from orthology : P08621 / Q62376 / small nuclear ribonucleoprotein U1 subunit 70
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 31925067
Gene end: 31933774
  
Corresponding Affymetrix probe sets: Dr.20272.1.A1_at (Zebrafish Array)   Dr.25566.1.S1_at (Zebrafish Array)   NM_001003875_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000104726
Ensembl peptide - ENSDARP00000055278
NCBI entrez gene - 445398     See in Manteia.
RefSeq - NM_001003875
RefSeq Peptide - NP_001003875
swissprot - E7EY23
swissprot - Q6DRE8
ZFIN ID - ZDB-GENE-040825-2
Ensembl - ENSDARG00000077126
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 P08621ENSG00000104852Homo sapiens
 Q62376ENSMUSG00000063511Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q4KMD3 / snrnp35 / small nuclear ribonucleoprotein 35 (U11/U12) / Q9D384* / Q16560* / small nuclear ribonucleoprotein U11/U12 subunit 35* / U11/U12 small nuclear ribonucleoprotein 35 kDa protein *ENSDARG0000009991316


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR022023  U1 small nuclear ribonucleoprotein of 70kDa N-terminal
 IPR034143  snRNP70, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0060218 hematopoietic stem cell differentiation IMP
 cellular_componentGO:0000243 commitment complex IBA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0030619 U1 snRNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000396 nervous system nervous system quality , abnormal
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 ZFA:0001058 caudal fin caudal fin kinked , abnormal
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 ZFA:0001077 thymus primordium thymus primordium common lymphoid progenitor absent , abnormal
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 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism morphology , abnormal
whole organism decreased length , abnormal
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 ZFA:0001115 trunk trunk necrotic , abnormal
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 ZFA:0005028 ventral wall of dorsal aorta ventral wall of dorsal aorta hematopoietic stem cell absent , abnormal
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 ZFA:0009052 motor neuron motor neuron axon truncated , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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