ENSMUSG00000063511


Mus musculus

Features
Gene ID: ENSMUSG00000063511
  
Biological name :Snrnp70
  
Synonyms : Q62376 / small nuclear ribonucleoprotein 70 (U1) / Snrnp70
  
Possible biological names infered from orthology : P08621 / small nuclear ribonucleoprotein U1 subunit 70
  
Species: Mus musculus
  
Chr. number: 7
Strand: -1
Band: B3
Gene start: 45376453
Gene end: 45395742
  
Corresponding Affymetrix probe sets: 10563260 (MoGene1.0st)   1429009_at (Mouse Genome 430 2.0 Array)   1429010_at (Mouse Genome 430 2.0 Array)   1429011_x_at (Mouse Genome 430 2.0 Array)   1451104_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000074160
Ensembl peptide - ENSMUSP00000148112
Ensembl peptide - ENSMUSP00000147682
Ensembl peptide - ENSMUSP00000147636
Ensembl peptide - ENSMUSP00000147400
Ensembl peptide - ENSMUSP00000147375
Ensembl peptide - ENSMUSP00000147368
NCBI entrez gene - 20637     See in Manteia.
MGI - MGI:98341
RefSeq - XM_011250831
RefSeq - NM_009224
RefSeq - XM_006540732
RefSeq - XM_006540733
RefSeq Peptide - NP_033250
swissprot - A0A1B0GR44
swissprot - A0A1B0GSX5
swissprot - A2RS68
swissprot - Q62376
swissprot - A0A1B0GRV8
swissprot - A0A1B0GRR8
swissprot - A0A1B0GR50
swissprot - A0A1B0GR69
Ensembl - ENSMUSG00000063511
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrnp70ENSDARG00000077126Danio rerio
 P08621ENSG00000104852Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9D384 / Snrnp35 / U11/U12 small nuclear ribonucleoprotein 35 kDa protein / Q16560* / small nuclear ribonucleoprotein U11/U12 subunit 35*ENSMUSG0000002940222


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR022023  U1 small nuclear ribonucleoprotein of 70kDa N-terminal
 IPR034143  snRNP70, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome ISO
 biological_processGO:0043484 regulation of RNA splicing ISO
 biological_processGO:0048026 positive regulation of mRNA splicing, via spliceosome IMP
 biological_processGO:0071300 cellular response to retinoic acid IEA
 biological_processGO:0071356 cellular response to tumor necrosis factor IEA
 biological_processGO:0071560 cellular response to transforming growth factor beta stimulus IEA
 cellular_componentGO:0000243 commitment complex IBA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex ISO
 cellular_componentGO:0005685 U1 snRNP ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0030619 U1 snRNA binding IBA
 molecular_functionGO:1990446 U1 snRNP binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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