ENSDARG00000099913


Danio rerio

Features
Gene ID: ENSDARG00000099913
  
Biological name :snrnp35
  
Synonyms : Q4KMD3 / small nuclear ribonucleoprotein 35 (U11/U12) / snrnp35
  
Possible biological names infered from orthology : Q16560 / Q9D384 / small nuclear ribonucleoprotein U11/U12 subunit 35 / U11/U12 small nuclear ribonucleoprotein 35 kDa protein
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 44373349
Gene end: 44378081
  
Corresponding Affymetrix probe sets: Dr.14465.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000135151
NCBI entrez gene - 569999     See in Manteia.
swissprot - Q4KMD3
ZFIN ID - ZDB-GENE-050706-77
Ensembl - ENSDARG00000099913
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNRNP35ENSGALG00000003318Gallus gallus
 Q16560ENSG00000184209Homo sapiens
 Q9D384ENSMUSG00000029402Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snrnp70 / small nuclear ribonucleoprotein 70 (U1) / P08621* / Q62376* / small nuclear ribonucleoprotein U1 subunit 70*ENSDARG0000007712638


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034146  snRNP35, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0000243 commitment complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0017069 snRNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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