ENSG00000184209


Homo sapiens

Features
Gene ID: ENSG00000184209
  
Biological name :SNRNP35
  
Synonyms : Q16560 / small nuclear ribonucleoprotein U11/U12 subunit 35 / SNRNP35
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q24.31
Gene start: 123457641
Gene end: 123473154
  
Corresponding Affymetrix probe sets: 1554017_at (Human Genome U133 Plus 2.0 Array)   205300_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000432595
Ensembl peptide - ENSP00000340774
Ensembl peptide - ENSP00000403310
NCBI entrez gene - 11066     See in Manteia.
RefSeq - XM_017018724
RefSeq - NM_022717
RefSeq - NM_180699
RefSeq - XM_006719204
RefSeq - XM_011537780
RefSeq Peptide - NP_073208
RefSeq Peptide - NP_851030
swissprot - Q16560
swissprot - A0A024RBU2
Ensembl - ENSG00000184209
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q4KMD3ENSDARG00000099913Danio rerio
 SNRNP35ENSGALG00000003318Gallus gallus
 Q9D384ENSMUSG00000029402Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P08621 / SNRNP70 / small nuclear ribonucleoprotein U1 subunit 70ENSG0000010485240


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034146  snRNP35, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IC
 cellular_componentGO:0000243 commitment complex IBA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IDA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0017069 snRNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr