ENSDARG00000077469


Danio rerio

Features
Gene ID: ENSDARG00000077469
  
Biological name :polr1b
  
Synonyms : polr1b / polymerase (RNA) I polypeptide B
  
Possible biological names infered from orthology : DNA-directed RNA polymerase I subunit RPA2 / P70700 / Q9H9Y6 / RNA polymerase I subunit B
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 41917606
Gene end: 41940467
  
Corresponding Affymetrix probe sets: Dr.1848.1.A1_a_at (Zebrafish Array)   Dr.1848.2.S1_at (Zebrafish Array)   NM_200518_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000100185
NCBI entrez gene - 325603     See in Manteia.
RefSeq - NM_200518
RefSeq Peptide - NP_956812
swissprot - B8JKD7
ZFIN ID - ZDB-GENE-040426-1598
Ensembl - ENSDARG00000077469
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLR1BENSGALG00000032273Gallus gallus
 POLR1BENSG00000125630Homo sapiens
 P70700ENSMUSG00000027395Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007120  DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
 IPR007121  RNA polymerase, beta subunit, conserved site
 IPR007641  RNA polymerase Rpb2, domain 7
 IPR007642  RNA polymerase Rpb2, domain 2
 IPR007644  RNA polymerase, beta subunit, protrusion
 IPR007645  RNA polymerase Rpb2, domain 3
 IPR009674  DNA-directed RNA polymerase I subunit RPA2, domain 4
 IPR015712  DNA-directed RNA polymerase, subunit 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006360 transcription by RNA polymerase I IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005736 DNA-directed RNA polymerase I complex IBA
 molecular_functionGO:0001054 RNA polymerase I activity IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0032549 ribonucleoside binding IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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