ENSGALG00000032273


Gallus gallus

Features
Gene ID: ENSGALG00000032273
  
Biological name :POLR1B
  
Synonyms : POLR1B / RNA polymerase I subunit B
  
Possible biological names infered from orthology : DNA-directed RNA polymerase I subunit RPA2 / P70700 / Q9H9Y6
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 16020690
Gene end: 16036933
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000057133
NCBI entrez gene - 101749883     See in Manteia.
RefSeq - XM_004935250
RefSeq - XM_015283544
RefSeq - XM_015283545
swissprot - A0A1D5PW04
Ensembl - ENSGALG00000032273
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 polr1bENSDARG00000077469Danio rerio
 POLR1BENSG00000125630Homo sapiens
 P70700ENSMUSG00000027395Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007120  DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
 IPR007121  RNA polymerase, beta subunit, conserved site
 IPR007641  RNA polymerase Rpb2, domain 7
 IPR007642  RNA polymerase Rpb2, domain 2
 IPR007644  RNA polymerase, beta subunit, protrusion
 IPR007645  RNA polymerase Rpb2, domain 3
 IPR009674  DNA-directed RNA polymerase I subunit RPA2, domain 4
 IPR015712  DNA-directed RNA polymerase, subunit 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0007566 embryo implantation IEA
 biological_processGO:0009303 rRNA transcription IEA
 biological_processGO:0017126 nucleologenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005736 DNA-directed RNA polymerase I complex IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0032549 ribonucleoside binding IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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