ENSDARG00000077852


Danio rerio

Features
Gene ID: ENSDARG00000077852
  
Biological name :samd11
  
Synonyms : samd11 / sterile alpha motif domain containing 11
  
Possible biological names infered from orthology : Q1RNF8 / Q96NU1 / Sterile alpha motif domain-containing protein 11
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 23020709
Gene end: 23123901
  
Corresponding Affymetrix probe sets: Dr.11161.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000116307
Ensembl peptide - ENSDARP00000152637
Ensembl peptide - ENSDARP00000118743
Ensembl peptide - ENSDARP00000112558
NCBI entrez gene - 569122     See in Manteia.
swissprot - E9QI26
swissprot - E7F6B2
swissprot - F1R2I0
ZFIN ID - ZDB-GENE-060428-2
Ensembl - ENSDARG00000077852
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SAMD11ENSGALG00000034453Gallus gallus
 Q96NU1ENSG00000187634Homo sapiens
 Q1RNF8ENSMUSG00000096351Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
samd7 / sterile alpha motif domain containing 7 / Q7Z3H4* / Q8C8Y5* / Sterile alpha motif domain-containing protein 7 *ENSDARG0000006035417
phc2b / polyhomeotic homolog 2b (Drosophila) / PHC2* / Q8IXK0* / Q9QWH1* / polyhomeotic homolog 2* / Polyhomeotic-like protein 2 *ENSDARG0000001322411
phc1 / polyhomeotic homolog 1 / P78364* / Mus musculus polyhomeotic 1 (Phc1), transcript variant 5, mRNA.*ENSDARG0000000297110
si:ch211-230g15.5ENSDARG000000791679
phc2a / Q8QHL5 / polyhomeotic homolog 2a (Drosophila) / PHC2* / Q8IXK0* / Q9QWH1* / polyhomeotic homolog 2* / Polyhomeotic-like protein 2 *ENSDARG000000566956


Protein motifs (from Interpro)
Interpro ID Name
 IPR000770  SAND domain
 IPR001660  Sterile alpha motif domain
 IPR010919  SAND-like domain superfamily
 IPR013761  Sterile alpha motif/pointed domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:1903506 regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr