ENSDARG00000013224


Danio rerio

Features
Gene ID: ENSDARG00000013224
  
Biological name :phc2b
  
Synonyms : phc2b / polyhomeotic homolog 2b (Drosophila)
  
Possible biological names infered from orthology : PHC2 / polyhomeotic homolog 2 / Polyhomeotic-like protein 2 / Q8IXK0 / Q9QWH1
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 48154954
Gene end: 48199276
  
Corresponding Affymetrix probe sets: Dr.14267.1.A2_at (Zebrafish Array)   NM_201202_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000018055
NCBI entrez gene - 394177     See in Manteia.
RefSeq - XM_005172100
RefSeq - XM_009302666
RefSeq - NM_201202
RefSeq Peptide - NP_957496
swissprot - F6P2R0
ZFIN ID - ZDB-GENE-040426-1113
Ensembl - ENSDARG00000013224
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000039532Gallus gallus
 PHC2ENSG00000134686Homo sapiens
 Phc2ENSMUSG00000028796Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
phc1 / polyhomeotic homolog 1 / P78364* / Mus musculus polyhomeotic 1 (Phc1), transcript variant 5, mRNA.*ENSDARG0000000297127
si:ch211-230g15.5ENSDARG0000007916722
phc2a / Q8QHL5 / polyhomeotic homolog 2a (Drosophila) / PHC2* / Q8IXK0* / Q9QWH1* / polyhomeotic homolog 2* / Polyhomeotic-like protein 2 *ENSDARG0000005669519
samd11 / sterile alpha motif domain containing 11 / Q1RNF8* / Q96NU1* / Sterile alpha motif domain-containing protein 11 *ENSDARG0000007785211
samd7 / sterile alpha motif domain containing 7 / Q7Z3H4* / Q8C8Y5* / Sterile alpha motif domain-containing protein 7 *ENSDARG000000603547


Protein motifs (from Interpro)
Interpro ID Name
 IPR001660  Sterile alpha motif domain
 IPR012313  Zinc finger, FCS-type
 IPR013761  Sterile alpha motif/pointed domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
Oxidative Stress Induced Senescence
SUMOylation of DNA damage response and repair proteins
SUMOylation of transcription cofactors
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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