ENSDARG00000078348


Danio rerio

Features
Gene ID: ENSDARG00000078348
  
Biological name :tcf20
  
Synonyms : tcf20 / transcription factor 20
  
Possible biological names infered from orthology : Q9EPQ8 / Q9UGU0 / Zfp957 / zinc finger protein 957
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 1260350
Gene end: 1283247
  
Corresponding Affymetrix probe sets: Dr.13830.1.A1_at (Zebrafish Array)   Dr.17347.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000154105
Ensembl peptide - ENSDARP00000124517
NCBI entrez gene - 100006417     See in Manteia.
RefSeq - XM_005171536
RefSeq - XM_021472464
swissprot - E7FE16
ZFIN ID - ZDB-GENE-110411-97
Ensembl - ENSDARG00000078348
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TCF20ENSGALG00000011878Gallus gallus
 TCF20ENSG00000100207Homo sapiens
 Tcf20ENSMUSG00000041852Mus musculus
 Zfp957ENSMUSG00000071262Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rai1 / retinoic acid induced 1 / Q7Z5J4*ENSDARG0000007667911
si:dkey-94l16.4ENSDARG000000901425
si:ch211-165g14.1ENSDARG000000864594


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR034732  Extended PHD (ePHD) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr